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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:43.4 nTPM
HPA:43.4 nTPM
GTEx:53.1 nTPM
FANTOM5:208.3 Scaled Tags Per Million
Pig:43.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 43.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 35.7
1981 Female, age 72, midline 46.4
2194 Female, age 79, both hemispheres 37.8
2048 Male, age 55, midline 36.1
2816 Male, age 47, midline 31.2
2565 Male, age 75, midline 27.0
Cervical spinal cord, dorsal horn
nTPM: 43.4
2173 Female, age 72, unknown 66.1
2296 Male, age 66, both hemispheres 60.5
2069 Male, age 47, both hemispheres 44.9
1877 Male, age 55, unknown 32.6
2297 Male, age 75, both hemispheres 32.1
2721 Male, age 90, both hemispheres 24.2
Cervical spinal cord, ventral horn
nTPM: 40.1
2098 Female, age 72, unknown 48.6
2068 Male, age 55, unknown 46.6
2820 Female, age 79, both hemispheres 39.8
2809 Male, age 90, both hemispheres 35.7
2295 Male, age 66, both hemispheres 35.5
2480 Male, age 75, both hemispheres 34.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 53.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 53.1
Samples: 159

Max nTPM: 119.7
Min nTPM: 13.9
Std nTPM: 19.4
Median nTPM: 51.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 119.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 118.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 117.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 101.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 96.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 93.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 83.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 83.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 83.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 80.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 80.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 79.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 79.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 79.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 77.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 77.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 76.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 76.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 76.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 75.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 74.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 74.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 74.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 74.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 73.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 70.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 70.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 69.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 69.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 69.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 68.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 68.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 68.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 67.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 67.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 67.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 66.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 65.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 64.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 64.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 64.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 63.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 63.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 63.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 62.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 62.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 61.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 61.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 60.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 60.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 60.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 59.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 58.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 58.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 58.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 57.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 57.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 57.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 57.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 57.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 57.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 57.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 57.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 56.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 56.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 56.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 56.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 55.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 55.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 55.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 53.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 53.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 52.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 52.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 52.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 52.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 52.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 51.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 51.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 51.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 51.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 50.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 50.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 50.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 50.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 49.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 49.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 49.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 49.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 48.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 48.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 48.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 48.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 47.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 47.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 47.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 47.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 47.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 46.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 46.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 46.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 44.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 44.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 44.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 44.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 43.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 43.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 43.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 43.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 42.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 42.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 41.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 41.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 41.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 41.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 41.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 41.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 41.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 40.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 40.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 39.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 39.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 39.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 37.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 37.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 37.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 36.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 35.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 35.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 33.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 33.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 33.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 33.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 32.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 32.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 31.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 31.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 30.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 30.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 30.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 29.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 29.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 29.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 28.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 28.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 27.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 26.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 26.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 26.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 26.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 24.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 24.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 24.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 23.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 22.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 22.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 21.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 18.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 13.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 208.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 208.3
FF:10181-103D1 60 years, female 273.3
FF:10159-103A6 76 years, female 143.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 43.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 27.9
Samples: 4

Max nTPM: 29.8
Min nTPM: 26.0
Sample A Female 29.8
Sample B Female 26.0
Sample C Male 27.3
Sample D Male 28.5
Ventral spinal cord
nTPM: 43.1
Samples: 4

Max nTPM: 48.8
Min nTPM: 35.9
Sample A Female 48.8
Sample B Female 43.9
Sample C Male 43.9
Sample D Male 35.9

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