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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:63.4 nTPM
HPA:63.4 nTPM
GTEx:55.0 nTPM
FANTOM5:35.7 Scaled Tags Per Million
Pig:36.9 nTPM
Mouse:140.0 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 63.4
Sample id Sample description nTPM
Amygdala
nTPM: 61.2
2814 Male, age 76, right hemisphere 67.2
1987 Female, age 91, left hemisphere 61.8
2517 Female, age 94, left hemisphere 60.5
2695 Female, age 67, right hemisphere 59.1
2514 Male, age 75, right hemisphere 57.3
Basal amygdala
nTPM: 60.2
2685 Female, age 94, left hemisphere 62.9
2243 Female, age 91, right hemisphere 60.6
2110 Male, age 80, left hemisphere 60.4
2609 Male, age 75, right hemisphere 60.4
1955 Male, age 76, both hemispheres 59.3
2827 Female, age 67, right hemisphere 57.3
Central amygdala
nTPM: 63.4
2826 Female, age 94, left hemisphere 69.5
1905 Male, age 76, both hemispheres 63.6
2515 Male, age 75, right hemisphere 62.7
2239 Male, age 80, left hemisphere 60.6
2701 Female, age 91, right hemisphere 60.5
Corticomedial amygdala
nTPM: 57.7
2829 Male, age 80, left hemisphere 62.4
2242 Female, age 91, right hemisphere 58.9
2428 Male, age 75, right hemisphere 57.9
2429 Female, age 94, left hemisphere 57.1
2535 Female, age 67, right hemisphere 55.1
2240 Male, age 76, both hemispheres 54.8
Lateral amygdala
nTPM: 62.4
2534 Female, age 94, left hemisphere 66.8
1883 Male, age 76, both hemispheres 65.6
2255 Female, age 91, right hemisphere 62.7
2256 Male, age 80, left hemisphere 61.2
2516 Male, age 75, right hemisphere 60.4
2830 Female, age 67, right hemisphere 57.5
Stria terminalis, bed nucleus
nTPM: 60.5
1974 Female, age 91, both hemispheres 62.9
2201 Male, age 74, unknown 59.5
2486 Female, age 94, both hemispheres 59.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 55.0
Samples: 152

Max nTPM: 100.0
Min nTPM: 24.3
Std nTPM: 12.0
Median nTPM: 54.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 100.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 93.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 90.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 80.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 79.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 78.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 78.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 77.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 76.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 74.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 72.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 72.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 71.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 71.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 71.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 70.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 68.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 68.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 67.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 67.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 67.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 66.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 65.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 65.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 64.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 64.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 64.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 64.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 64.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 64.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 63.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 63.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 63.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 63.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 62.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 62.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 62.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 62.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 62.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 61.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 61.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 60.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 60.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 60.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 60.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 60.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 59.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 59.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 59.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 59.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 58.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 58.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 58.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 58.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 58.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 58.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 57.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 57.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 57.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 57.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 56.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 56.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 56.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 56.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 56.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 56.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 56.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 56.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 56.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 55.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 55.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 55.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 55.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 54.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 54.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 54.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 53.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 53.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 53.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 53.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 53.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 53.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 53.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 53.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 53.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 53.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 53.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 52.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 52.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 52.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 52.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 51.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 51.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 51.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 51.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 50.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 50.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 50.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 50.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 50.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 50.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 50.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 49.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 48.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 47.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 47.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 47.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 47.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 47.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 47.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 47.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 46.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 46.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 46.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 46.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 46.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 45.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 45.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 45.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 44.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 44.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 44.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 43.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 43.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 42.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 42.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 42.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 42.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 42.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 42.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 41.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 41.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 41.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 41.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 41.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 41.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 40.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 40.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 39.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 38.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 38.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 38.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 38.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 37.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 37.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 37.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 36.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 36.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 35.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 28.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 24.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 35.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 35.7
FF:10151-102I7 76 years, female 35.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 36.9
Pig sample Sample description nTPM
Amygdala
nTPM: 36.9
Samples: 4

Max nTPM: 49.8
Min nTPM: 30.2
Sample A Female 49.8
Sample B Female 32.7
Sample C Male 34.9
Sample D Male 30.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 140.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 140.0
Samples: 4

Max nTPM: 158.3
Min nTPM: 127.8
Sample A Male 129.2
Sample B Male 144.8
Sample C Female 158.3
Sample D Female 127.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
71283674 Antisense, RP_050825_01_C10, Mouse strain C57BL/6J (56 days, male) 0.0

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