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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:134.8 nTPM
HPA:134.8 nTPM
GTEx:1015.0 nTPM
FANTOM5:527.7 Scaled Tags Per Million
Pig:263.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 134.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 119.9
1981 Female, age 72, midline 131.7
2816 Male, age 47, midline 124.8
2048 Male, age 55, midline 121.0
2565 Male, age 75, midline 111.2
2194 Female, age 79, both hemispheres 111.0
Cervical spinal cord, dorsal horn
nTPM: 125.9
2296 Male, age 66, both hemispheres 179.8
2173 Female, age 72, unknown 166.1
2069 Male, age 47, both hemispheres 122.1
1877 Male, age 55, unknown 112.6
2297 Male, age 75, both hemispheres 87.5
2721 Male, age 90, both hemispheres 87.1
Cervical spinal cord, ventral horn
nTPM: 134.8
2098 Female, age 72, unknown 149.3
2480 Male, age 75, both hemispheres 147.8
2809 Male, age 90, both hemispheres 134.5
2295 Male, age 66, both hemispheres 133.8
2820 Female, age 79, both hemispheres 123.4
2068 Male, age 55, unknown 120.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1015.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1015.0
Samples: 159

Max nTPM: 1853.6
Min nTPM: 317.1
Std nTPM: 316.0
Median nTPM: 1014.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1853.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1691.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1667.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1636.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1574.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1547.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1516.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1513.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1490.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1488.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1487.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1479.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1477.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1471.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1466.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1464.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1455.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1447.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1431.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1408.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1402.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1388.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1385.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1368.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1362.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1343.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1332.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1320.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1315.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1312.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1307.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1302.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1298.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1259.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1251.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1249.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1248.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1245.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1245.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1244.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1242.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1241.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1237.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1229.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1218.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1216.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1206.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1202.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1199.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1184.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1174.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1163.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1163.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1160.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1156.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1151.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1132.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1125.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1122.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1104.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1101.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1099.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1094.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1093.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1088.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1085.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1080.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1077.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1067.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1058.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1057.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1054.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1054.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1048.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1047.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1046.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1039.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1030.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1026.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1014.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1012.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1011.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1008.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1006.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1000.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 995.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 988.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 980.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 972.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 967.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 949.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 947.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 947.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 944.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 938.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 935.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 933.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 925.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 903.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 898.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 897.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 897.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 896.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 896.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 895.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 892.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 884.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 881.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 870.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 866.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 844.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 838.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 838.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 838.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 836.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 835.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 817.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 813.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 807.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 792.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 789.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 788.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 767.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 765.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 765.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 739.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 726.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 715.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 691.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 690.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 685.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 677.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 655.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 652.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 649.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 646.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 630.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 624.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 622.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 621.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 608.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 605.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 602.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 592.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 570.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 565.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 538.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 522.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 520.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 501.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 480.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 459.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 443.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 441.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 434.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 425.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 403.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 387.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 317.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 527.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 527.7
FF:10181-103D1 60 years, female 664.4
FF:10159-103A6 76 years, female 391.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 263.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 213.5
Samples: 4

Max nTPM: 224.5
Min nTPM: 196.0
Sample A Female 221.7
Sample B Female 211.8
Sample C Male 196.0
Sample D Male 224.5
Ventral spinal cord
nTPM: 263.4
Samples: 4

Max nTPM: 316.3
Min nTPM: 228.4
Sample A Female 246.0
Sample B Female 262.9
Sample C Male 228.4
Sample D Male 316.3

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