BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.7 nTPM
HPA:37.7 nTPM
GTEx:30.1 nTPM
FANTOM5:35.7 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:23.6 nTPM
Allen mouse:1.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA056293
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.1
2846 Female, age 79, unknown 38.9
2481 Female, age 94, left hemisphere 36.6
1857 Female, age 85, left hemisphere 35.3
1854 Male, age 80, left hemisphere 34.5
1781 Male, age 74, unknown 34.4
2290 Female, age 72, unknown 34.4
2288 Male, age 75, left hemisphere 34.2
2289 Male, age 61, right hemisphere 32.7
Claustrum
nTPM: 33.3
2645 Female, age 72, unknown 35.1
2196 Female, age 79, unknown 34.5
2292 Female, age 85, both hemispheres 33.6
2568 Male, age 61, both hemispheres 33.3
2284 Female, age 91, both hemispheres 33.2
2392 Female, age 94, both hemispheres 33.1
2491 Male, age 75, both hemispheres 32.7
2198 Male, age 80, both hemispheres 32.4
1956 Male, age 74, unknown 31.8
Globus pallidus, externus
nTPM: 36.0
2646 Male, age 61, right hemisphere 37.3
2772 Female, age 79, unknown 37.0
1996 Male, age 80, right hemisphere 36.1
2567 Female, age 72, unknown 35.4
2395 Male, age 75, both hemispheres 34.2
Globus pallidus, internus
nTPM: 35.8
2483 Female, age 94, right hemisphere 38.3
2287 Male, age 75, right hemisphere 37.3
1818 Male, age 74, unknown 37.2
2037 Male, age 80, right hemisphere 36.6
2778 Female, age 91, both hemispheres 34.6
2111 Female, age 85, right hemisphere 34.2
2566 Female, age 72, unknown 32.1
Nucleus accumbens
nTPM: 33.4
2286 Male, age 75, left hemisphere 34.7
2391 Female, age 94, left hemisphere 34.6
1783 Male, age 74, unknown 34.3
2698 Female, age 72, unknown 33.8
1856 Female, age 91, right hemisphere 33.7
1806 Female, age 85, left hemisphere 33.3
2824 Male, age 61, right hemisphere 32.1
2732 Male, age 80, right hemisphere 30.9
Nucleus basalis of Meynert
nTPM: 37.7
2569 Male, age 61, both hemispheres 40.9
2484 Female, age 94, left hemisphere 38.6
2821 Male, age 75, both hemispheres 36.3
2393 Male, age 80, right hemisphere 35.2
Nucleus of the diagonal band
nTPM: 31.5
2029 Male, age 61, right hemisphere 32.7
1979 Male, age 74, unknown 31.8
2195 Female, age 85, both hemispheres 31.6
1812 Female, age 91, both hemispheres 31.3
2775 Male, age 80, right hemisphere 30.2
Olfactory tubercle
nTPM: 31.6
2856 Male, age 75, right hemisphere 33.5
1846 Male, age 80, right hemisphere 31.6
1998 Female, age 91, both hemispheres 31.4
2487 Female, age 94, left hemisphere 29.8
Putamen
nTPM: 36.1
2466 Female, age 79, unknown 39.6
2489 Female, age 72, unknown 39.3
2482 Female, age 94, left hemisphere 35.7
1937 Female, age 91, right hemisphere 35.1
1838 Male, age 80, right hemisphere 35.0
1829 Male, age 74, unknown 34.2
2647 Male, age 75, left hemisphere 33.6
Septal nuclei
nTPM: 32.2
2394 Male, age 61, left hemisphere 35.2
2031 Female, age 72, unknown 33.4
1960 Male, age 74, unknown 32.9
2199 Male, age 80, right hemisphere 32.2
2059 Female, age 85, both hemispheres 31.5
2009 Female, age 91, both hemispheres 30.4
2629 Female, age 94, right hemisphere 30.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 30.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.7
Samples: 246

Max nTPM: 97.4
Min nTPM: 2.2
Std nTPM: 14.4
Median nTPM: 18.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 97.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 78.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 73.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 70.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 66.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 65.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 65.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 60.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 57.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 57.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 52.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.7
Samples: 246

Max nTPM: 129.9
Min nTPM: 2.5
Std nTPM: 16.1
Median nTPM: 11.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 129.9
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 100.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 99.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 93.0
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 80.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 72.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 65.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 53.3
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 51.2
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 49.1
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 48.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 30.1
Samples: 205

Max nTPM: 146.0
Min nTPM: 7.0
Std nTPM: 18.3
Median nTPM: 25.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 146.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 145.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 89.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 74.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 67.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 65.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 64.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 64.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 63.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 63.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 63.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 26.6
FF:10164-103B2 76 years, female 26.6
Globus pallidus
Scaled Tags Per Million: 35.7
FF:10161-103A8 76 years, female 39.2
FF:10175-103C4 60 years, female 32.3
Nucleus accumbens
Scaled Tags Per Million: 30.6
FF:10037-101F1 23-56 years, mixed 30.6
Putamen
Scaled Tags Per Million: 14.9
FF:10176-103C5 60 years, female 14.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.4
Pig sample Sample description nTPM
Caudate
nTPM: 8.1
Samples: 4

Max nTPM: 10.0
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 7.1
Sample C Male 10.0
Sample D Male 9.1
Putamen
nTPM: 11.4
Samples: 4

Max nTPM: 13.8
Min nTPM: 7.9
Sample A Female 10.5
Sample B Female 7.9
Sample C Male 13.5
Sample D Male 13.8
Septum
nTPM: 7.7
Samples: 4

Max nTPM: 10.7
Min nTPM: 5.7
Sample A Female 7.5
Sample B Female 6.8
Sample C Male 10.7
Sample D Male 5.7
Ventral pallidum
nTPM: 7.6
Samples: 4

Max nTPM: 10.1
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 6.7
Sample C Male 10.1
Sample D Male 7.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 23.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.6
Samples: 4

Max nTPM: 27.2
Min nTPM: 20.4
Sample A Male 20.4
Sample B Male 22.8
Sample C Female 27.2
Sample D Female 23.9
Septum
nTPM: 14.3
Samples: 4

Max nTPM: 15.4
Min nTPM: 13.2
Sample A Male 15.4
Sample B Male 14.5
Sample C Female 13.2
Sample D Female 14.1
Ventral forebrain
nTPM: 20.7
Samples: 4

Max nTPM: 25.5
Min nTPM: 17.6
Sample A Male 17.6
Sample B Male 18.0
Sample C Female 25.5
Sample D Female 21.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.9
69262331 Antisense, RP_050303_02_B01, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 1.7
69262331 Antisense, RP_050303_02_B01, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.