MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:127.0 nTPM
HPA:127.0 nTPM
GTEx:173.1 nTPM
FANTOM5:105.5 Scaled Tags Per Million
Pig:126.1 nTPM
Mouse:14.0 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 127.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.1
2666 Male, age 74, left hemisphere 124.8
2019 Male, age 18, unknown 124.6
1830 Male, age 51, unknown 123.9
1870 Female, age 42, unknown 122.7
2411 Female, age 72, unknown 122.5
1833 Male, age 53, unknown 121.8
2828 Female, age 72, unknown 119.5
2586 Male, age 75, left hemisphere 118.6
1827 Male, age 72, unknown 116.5
2219 Male, age 76, both hemispheres 116.0
Dorsal raphe nucleus
nTPM: 119.2
2016 Female, age 72, unknown 121.0
2047 Male, age 72, unknown 120.2
2750 Male, age 76, both hemispheres 120.0
1828 Male, age 53, unknown 117.7
2298 Female, age 72, unknown 117.2
Inferior colliculus
nTPM: 122.0
1890 Male, age 53, unknown 138.6
2849 Male, age 72, unknown 116.9
2097 Female, age 72, unknown 116.7
1848 Female, age 42, unknown 115.6
Median raphe nucleus
nTPM: 123.1
2220 Male, age 76, midline 123.1
Pedunculopontine tegmental nucleus
nTPM: 127.0
2338 Male, age 61, both hemispheres 135.6
2334 Male, age 80, both hemispheres 127.6
1921 Female, age 85, both hemispheres 117.8
Periaquaductal grey, anterior
nTPM: 118.6
1795 Male, age 51, unknown 119.5
2502 Female, age 75, unknown 118.6
1947 Male, age 18, unknown 117.7
Periaquaductal grey, dorsal
nTPM: 117.5
1831 Male, age 72, unknown 122.2
2464 Female, age 72, unknown 119.0
2850 Male, age 76, both hemispheres 116.2
1840 Male, age 53, unknown 112.7
Periaquaductal grey, lateral
nTPM: 118.5
2272 Male, age 74, both hemispheres 121.4
2053 Male, age 18, unknown 117.6
2140 Male, age 76, both hemispheres 116.5
Pretectal area
nTPM: 117.4
2316 Male, age 76, right hemisphere 121.6
2825 Male, age 18, unknown 119.3
2224 Female, age 72, unknown 119.1
1817 Female, age 42, unknown 118.7
1815 Male, age 53, unknown 118.2
1944 Female, age 72, unknown 117.4
2273 Male, age 74, both hemispheres 116.6
2667 Female, age 75, unknown 116.3
2007 Male, age 72, unknown 115.6
1816 Male, age 51, unknown 114.4
2407 Male, age 75, both hemispheres 114.4
Red nucleus
nTPM: 125.0
2769 Male, age 72, unknown 129.3
2584 Male, age 75, left hemisphere 127.8
2823 Male, age 76, right hemisphere 127.5
2227 Male, age 72, unknown 127.0
1865 Male, age 51, unknown 126.9
2785 Male, age 18, unknown 126.9
2588 Male, age 74, left hemisphere 126.7
1904 Male, age 53, unknown 123.9
2503 Female, age 72, unknown 123.1
1954 Female, age 42, unknown 121.0
1821 Female, age 72, unknown 120.5
2725 Female, age 75, unknown 119.8
Substantia nigra
nTPM: 120.1
2665 Male, age 74, both hemispheres 133.2
2590 Female, age 75, unknown 126.1
1851 Male, age 51, unknown 122.2
2583 Male, age 75, right hemisphere 120.6
2699 Male, age 18, unknown 117.8
2409 Female, age 72, unknown 117.0
1889 Female, age 72, unknown 116.9
2241 Male, age 72, unknown 116.9
1916 Female, age 42, unknown 115.3
1941 Male, age 53, unknown 115.2
Superior colliculus
nTPM: 120.3
2087 Female, age 72, unknown 128.1
1913 Female, age 42, unknown 125.7
1995 Male, age 72, unknown 121.7
2587 Male, age 74, left hemisphere 120.7
1895 Male, age 76, right hemisphere 120.1
2668 Female, age 75, unknown 119.5
1796 Male, age 53, unknown 118.2
1839 Male, age 51, unknown 117.5
2261 Male, age 18, unknown 116.8
2664 Male, age 75, both hemispheres 114.6
Ventral tegmental area
nTPM: 126.7
2218 Male, age 76, both hemispheres 131.2
2021 Male, age 53, unknown 128.9
1915 Female, age 42, unknown 128.4
1942 Male, age 51, unknown 124.5
2410 Female, age 72, unknown 123.6
2223 Female, age 72, unknown 123.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 173.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 173.1
Samples: 139

Max nTPM: 4452.1
Min nTPM: 26.8
Std nTPM: 376.9
Median nTPM: 115.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 4452.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 551.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 538.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 428.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 415.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 400.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 356.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 337.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 326.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 313.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 307.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.5
FF:10158-103A5 76 years, female 105.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 126.1
Pig sample Sample description nTPM
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 49.6
Min nTPM: 14.8
Sample A Female 49.6
Sample B Female 35.1
Sample C Male 36.7
Sample D Male 14.8
Periaqueductal gray
nTPM: 11.2
Samples: 3

Max nTPM: 15.2
Min nTPM: 6.6
Sample B Female 15.2
Sample C Male 11.9
Sample D Male 6.6
Substantia nigra
nTPM: 126.2
Samples: 4

Max nTPM: 342.3
Min nTPM: 27.9
Sample A Female 81.4
Sample B Female 342.3
Sample C Male 27.9
Sample D Male 53.0
Superior colliculi
nTPM: 80.7
Samples: 4

Max nTPM: 154.0
Min nTPM: 34.9
Sample A Female 82.5
Sample B Female 154.0
Sample C Male 34.9
Sample D Male 51.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.0
Samples: 4

Max nTPM: 17.6
Min nTPM: 9.6
Sample A Male 17.2
Sample B Male 17.6
Sample C Female 9.6
Sample D Female 11.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
68443116 Antisense, RP_050111_01_D06, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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