BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.5 nTPM
HPA:62.5 nTPM
GTEx:43.6 nTPM
FANTOM5:28.9 Scaled Tags Per Million
Mouse:22.9 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.4
1781 Male, age 74, unknown 60.8
2481 Female, age 94, left hemisphere 60.4
1857 Female, age 85, left hemisphere 60.0
2846 Female, age 79, unknown 59.9
2288 Male, age 75, left hemisphere 59.5
2290 Female, age 72, unknown 59.0
1854 Male, age 80, left hemisphere 58.8
2289 Male, age 61, right hemisphere 56.7
Claustrum
nTPM: 62.2
2198 Male, age 80, both hemispheres 65.0
2196 Female, age 79, unknown 63.3
2568 Male, age 61, both hemispheres 63.1
2645 Female, age 72, unknown 63.1
2491 Male, age 75, both hemispheres 62.8
2284 Female, age 91, both hemispheres 62.7
2392 Female, age 94, both hemispheres 60.7
1956 Male, age 74, unknown 60.1
2292 Female, age 85, both hemispheres 59.1
Globus pallidus, externus
nTPM: 57.8
2772 Female, age 79, unknown 59.5
1996 Male, age 80, right hemisphere 59.1
2395 Male, age 75, both hemispheres 58.0
2646 Male, age 61, right hemisphere 57.0
2567 Female, age 72, unknown 55.2
Globus pallidus, internus
nTPM: 57.8
2483 Female, age 94, right hemisphere 61.4
2287 Male, age 75, right hemisphere 60.0
2037 Male, age 80, right hemisphere 57.7
2778 Female, age 91, both hemispheres 57.7
1818 Male, age 74, unknown 57.4
2566 Female, age 72, unknown 55.5
2111 Female, age 85, right hemisphere 55.0
Nucleus accumbens
nTPM: 58.8
1856 Female, age 91, right hemisphere 60.9
2286 Male, age 75, left hemisphere 60.8
1806 Female, age 85, left hemisphere 58.9
1783 Male, age 74, unknown 58.8
2391 Female, age 94, left hemisphere 58.8
2698 Female, age 72, unknown 58.4
2824 Male, age 61, right hemisphere 58.1
2732 Male, age 80, right hemisphere 55.7
Nucleus basalis of Meynert
nTPM: 58.3
2484 Female, age 94, left hemisphere 59.3
2569 Male, age 61, both hemispheres 58.5
2393 Male, age 80, right hemisphere 58.3
2821 Male, age 75, both hemispheres 57.1
Nucleus of the diagonal band
nTPM: 61.7
2775 Male, age 80, right hemisphere 64.4
1812 Female, age 91, both hemispheres 63.3
2195 Female, age 85, both hemispheres 61.4
2029 Male, age 61, right hemisphere 60.7
1979 Male, age 74, unknown 58.6
Olfactory tubercle
nTPM: 62.5
1998 Female, age 91, both hemispheres 64.2
1846 Male, age 80, right hemisphere 64.1
2487 Female, age 94, left hemisphere 60.8
2856 Male, age 75, right hemisphere 60.7
Putamen
nTPM: 58.4
2482 Female, age 94, left hemisphere 60.3
2647 Male, age 75, left hemisphere 59.1
2466 Female, age 79, unknown 58.9
1937 Female, age 91, right hemisphere 58.7
1829 Male, age 74, unknown 57.4
1838 Male, age 80, right hemisphere 57.3
2489 Female, age 72, unknown 56.8
Septal nuclei
nTPM: 60.9
2031 Female, age 72, unknown 64.3
1960 Male, age 74, unknown 63.4
2009 Female, age 91, both hemispheres 61.9
2629 Female, age 94, right hemisphere 59.9
2059 Female, age 85, both hemispheres 59.4
2199 Male, age 80, right hemisphere 59.3
2394 Male, age 61, left hemisphere 58.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 41.3
Samples: 246

Max nTPM: 69.2
Min nTPM: 22.9
Std nTPM: 8.4
Median nTPM: 40.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 69.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 68.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 67.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 64.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 64.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 62.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 61.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 61.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 58.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 58.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 58.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.6
Samples: 246

Max nTPM: 83.9
Min nTPM: 18.5
Std nTPM: 11.2
Median nTPM: 42.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 83.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 82.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 77.3
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 76.8
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 74.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 73.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 68.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 68.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 67.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 67.2
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 66.5
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Brain - Putamen (basal ganglia)
Average nTPM: 42.6
Samples: 205

Max nTPM: 69.4
Min nTPM: 20.4
Std nTPM: 8.7
Median nTPM: 41.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 69.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 66.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 63.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 62.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 61.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 61.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 59.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 58.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 57.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 57.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 57.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.9
FF:10164-103B2 76 years, female 28.9
Globus pallidus
Scaled Tags Per Million: 19.5
FF:10175-103C4 60 years, female 19.7
FF:10161-103A8 76 years, female 19.3
Nucleus accumbens
Scaled Tags Per Million: 28.1
FF:10037-101F1 23-56 years, mixed 28.1
Putamen
Scaled Tags Per Million: 23.8
FF:10176-103C5 60 years, female 23.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 18.5
Samples: 4

Max nTPM: 20.8
Min nTPM: 15.4
Sample A Male 15.4
Sample B Male 17.3
Sample C Female 20.8
Sample D Female 20.3
Septum
nTPM: 22.9
Samples: 4

Max nTPM: 24.1
Min nTPM: 20.1
Sample A Male 23.5
Sample B Male 20.1
Sample C Female 24.1
Sample D Female 23.8
Ventral forebrain
nTPM: 22.0
Samples: 4

Max nTPM: 23.6
Min nTPM: 20.4
Sample A Male 20.7
Sample B Male 23.2
Sample C Female 20.4
Sample D Female 23.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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