MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.5 nTPM
HPA:62.5 nTPM
GTEx:40.1 nTPM
FANTOM5:19.2 Scaled Tags Per Million
Mouse:20.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.6
2666 Male, age 74, left hemisphere 62.0
2586 Male, age 75, left hemisphere 61.7
1827 Male, age 72, unknown 59.2
2828 Female, age 72, unknown 58.9
1870 Female, age 42, unknown 58.1
2019 Male, age 18, unknown 57.6
1833 Male, age 53, unknown 57.5
2219 Male, age 76, both hemispheres 57.4
1830 Male, age 51, unknown 57.3
2411 Female, age 72, unknown 56.8
Dorsal raphe nucleus
nTPM: 58.4
1828 Male, age 53, unknown 59.0
2047 Male, age 72, unknown 58.8
2298 Female, age 72, unknown 58.6
2750 Male, age 76, both hemispheres 58.2
2016 Female, age 72, unknown 57.4
Inferior colliculus
nTPM: 59.3
1848 Female, age 42, unknown 60.0
2097 Female, age 72, unknown 59.5
1890 Male, age 53, unknown 59.1
2849 Male, age 72, unknown 58.6
Median raphe nucleus
nTPM: 59.1
2220 Male, age 76, midline 59.1
Pedunculopontine tegmental nucleus
nTPM: 57.7
1921 Female, age 85, both hemispheres 58.6
2334 Male, age 80, both hemispheres 58.2
2338 Male, age 61, both hemispheres 56.2
Periaquaductal grey, anterior
nTPM: 62.5
1947 Male, age 18, unknown 65.9
1795 Male, age 51, unknown 61.8
2502 Female, age 75, unknown 59.7
Periaquaductal grey, dorsal
nTPM: 57.3
1840 Male, age 53, unknown 58.6
2464 Female, age 72, unknown 57.1
2850 Male, age 76, both hemispheres 57.1
1831 Male, age 72, unknown 56.2
Periaquaductal grey, lateral
nTPM: 57.2
2053 Male, age 18, unknown 57.7
2140 Male, age 76, both hemispheres 57.2
2272 Male, age 74, both hemispheres 56.8
Pretectal area
nTPM: 59.3
1816 Male, age 51, unknown 62.3
2007 Male, age 72, unknown 61.7
1817 Female, age 42, unknown 61.3
1815 Male, age 53, unknown 60.8
1944 Female, age 72, unknown 60.2
2667 Female, age 75, unknown 59.7
2825 Male, age 18, unknown 58.9
2316 Male, age 76, right hemisphere 57.3
2224 Female, age 72, unknown 56.9
2407 Male, age 75, both hemispheres 56.9
2273 Male, age 74, both hemispheres 56.7
Red nucleus
nTPM: 57.6
1821 Female, age 72, unknown 60.6
2725 Female, age 75, unknown 58.4
2503 Female, age 72, unknown 58.2
1954 Female, age 42, unknown 57.9
1865 Male, age 51, unknown 57.6
2227 Male, age 72, unknown 57.6
1904 Male, age 53, unknown 57.4
2584 Male, age 75, left hemisphere 57.4
2769 Male, age 72, unknown 56.9
2785 Male, age 18, unknown 56.9
2588 Male, age 74, left hemisphere 56.7
2823 Male, age 76, right hemisphere 55.9
Substantia nigra
nTPM: 60.9
1916 Female, age 42, unknown 64.7
2241 Male, age 72, unknown 61.9
2665 Male, age 74, both hemispheres 61.9
2409 Female, age 72, unknown 61.6
1851 Male, age 51, unknown 61.5
1941 Male, age 53, unknown 60.5
1889 Female, age 72, unknown 60.3
2583 Male, age 75, right hemisphere 59.7
2699 Male, age 18, unknown 58.5
2590 Female, age 75, unknown 57.9
Superior colliculus
nTPM: 59.0
2668 Female, age 75, unknown 63.0
2261 Male, age 18, unknown 60.1
2087 Female, age 72, unknown 59.9
1796 Male, age 53, unknown 59.8
1895 Male, age 76, right hemisphere 59.1
2664 Male, age 75, both hemispheres 58.5
1839 Male, age 51, unknown 57.9
2587 Male, age 74, left hemisphere 57.7
1913 Female, age 42, unknown 57.3
1995 Male, age 72, unknown 57.3
Ventral tegmental area
nTPM: 59.1
2410 Female, age 72, unknown 61.9
1915 Female, age 42, unknown 60.6
2218 Male, age 76, both hemispheres 60.2
1942 Male, age 51, unknown 58.4
2223 Female, age 72, unknown 56.8
2021 Male, age 53, unknown 56.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.1
Samples: 139

Max nTPM: 67.6
Min nTPM: 20.0
Std nTPM: 8.5
Median nTPM: 40.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 67.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 58.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 58.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 58.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 57.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 56.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 55.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 55.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 55.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 54.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.2
FF:10158-103A5 76 years, female 19.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 21.8
Min nTPM: 18.4
Sample A Male 19.9
Sample B Male 18.4
Sample C Female 19.9
Sample D Female 21.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.