BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:34.9 nTPM
HPA:34.9 nTPM
GTEx:40.1 nTPM
FANTOM5:18.2 Scaled Tags Per Million
Pig:6.5 nTPM
Mouse:3.7 nTPM
Allen mouse:4.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038705Antibody HPA038706
Glial cells Not detectedNot detected
Neuronal cells MediumLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.6
2481 Female, age 94, left hemisphere 35.7
2289 Male, age 61, right hemisphere 31.9
1854 Male, age 80, left hemisphere 31.8
1857 Female, age 85, left hemisphere 31.4
2846 Female, age 79, unknown 31.3
2290 Female, age 72, unknown 30.7
2288 Male, age 75, left hemisphere 30.4
1781 Male, age 74, unknown 29.7
Claustrum
nTPM: 29.7
2196 Female, age 79, unknown 30.4
2198 Male, age 80, both hemispheres 30.4
2491 Male, age 75, both hemispheres 30.1
2292 Female, age 85, both hemispheres 30.0
1956 Male, age 74, unknown 29.9
2284 Female, age 91, both hemispheres 29.3
2392 Female, age 94, both hemispheres 29.0
2568 Male, age 61, both hemispheres 29.0
2645 Female, age 72, unknown 28.9
Globus pallidus, externus
nTPM: 34.9
1996 Male, age 80, right hemisphere 38.2
2772 Female, age 79, unknown 35.8
2646 Male, age 61, right hemisphere 34.1
2395 Male, age 75, both hemispheres 33.9
2567 Female, age 72, unknown 32.6
Globus pallidus, internus
nTPM: 34.3
2483 Female, age 94, right hemisphere 35.9
2287 Male, age 75, right hemisphere 35.1
2037 Male, age 80, right hemisphere 34.4
1818 Male, age 74, unknown 34.2
2778 Female, age 91, both hemispheres 33.9
2111 Female, age 85, right hemisphere 33.5
2566 Female, age 72, unknown 32.8
Nucleus accumbens
nTPM: 30.7
2286 Male, age 75, left hemisphere 32.2
2391 Female, age 94, left hemisphere 31.5
2732 Male, age 80, right hemisphere 31.1
1856 Female, age 91, right hemisphere 30.8
1806 Female, age 85, left hemisphere 30.7
2698 Female, age 72, unknown 30.6
1783 Male, age 74, unknown 30.2
2824 Male, age 61, right hemisphere 28.5
Nucleus basalis of Meynert
nTPM: 32.2
2569 Male, age 61, both hemispheres 35.3
2484 Female, age 94, left hemisphere 31.8
2393 Male, age 80, right hemisphere 31.5
2821 Male, age 75, both hemispheres 30.4
Nucleus of the diagonal band
nTPM: 29.6
1812 Female, age 91, both hemispheres 30.0
1979 Male, age 74, unknown 30.0
2775 Male, age 80, right hemisphere 29.6
2029 Male, age 61, right hemisphere 29.4
2195 Female, age 85, both hemispheres 29.0
Olfactory tubercle
nTPM: 29.4
2856 Male, age 75, right hemisphere 29.9
1998 Female, age 91, both hemispheres 29.8
1846 Male, age 80, right hemisphere 29.6
2487 Female, age 94, left hemisphere 28.5
Putamen
nTPM: 31.9
2647 Male, age 75, left hemisphere 33.5
2482 Female, age 94, left hemisphere 32.2
2466 Female, age 79, unknown 32.1
1829 Male, age 74, unknown 31.9
1838 Male, age 80, right hemisphere 31.8
2489 Female, age 72, unknown 31.8
1937 Female, age 91, right hemisphere 29.8
Septal nuclei
nTPM: 30.0
2059 Female, age 85, both hemispheres 31.2
2199 Male, age 80, right hemisphere 30.6
1960 Male, age 74, unknown 30.0
2394 Male, age 61, left hemisphere 29.9
2031 Female, age 72, unknown 29.8
2009 Female, age 91, both hemispheres 29.3
2629 Female, age 94, right hemisphere 29.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.5
Samples: 246

Max nTPM: 74.8
Min nTPM: 14.3
Std nTPM: 9.7
Median nTPM: 34.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 74.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 71.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 65.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 64.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 62.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 62.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 60.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 59.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 59.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 56.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 55.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.7
Samples: 246

Max nTPM: 89.5
Min nTPM: 11.0
Std nTPM: 11.5
Median nTPM: 30.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 89.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 80.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 77.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 61.4
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 60.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 60.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 59.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 57.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 56.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 56.1
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 55.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 40.1
Samples: 205

Max nTPM: 84.7
Min nTPM: 15.9
Std nTPM: 10.1
Median nTPM: 39.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 84.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 69.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 63.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 62.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 61.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 60.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 60.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 59.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 59.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 58.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 58.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.2
FF:10164-103B2 76 years, female 18.2
Globus pallidus
Scaled Tags Per Million: 13.5
FF:10161-103A8 76 years, female 17.7
FF:10175-103C4 60 years, female 9.4
Nucleus accumbens
Scaled Tags Per Million: 12.8
FF:10037-101F1 23-56 years, mixed 12.8
Putamen
Scaled Tags Per Million: 13.5
FF:10176-103C5 60 years, female 13.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.5
Pig sample Sample description nTPM
Caudate
nTPM: 6.1
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.4
Sample A Female 6.4
Sample B Female 5.6
Sample C Male 7.1
Sample D Male 5.4
Putamen
nTPM: 6.5
Samples: 4

Max nTPM: 8.6
Min nTPM: 5.4
Sample A Female 5.5
Sample B Female 5.4
Sample C Male 8.6
Sample D Male 6.5
Septum
nTPM: 4.2
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.7
Sample A Female 5.2
Sample B Female 4.0
Sample C Male 3.7
Sample D Male 3.8
Ventral pallidum
nTPM: 4.8
Samples: 4

Max nTPM: 5.7
Min nTPM: 3.6
Sample A Female 5.7
Sample B Female 4.5
Sample C Male 5.4
Sample D Male 3.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.7
Samples: 4

Max nTPM: 4.9
Min nTPM: 2.5
Sample A Male 4.9
Sample B Male 3.6
Sample C Female 3.6
Sample D Female 2.5
Septum
nTPM: 3.5
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.5
Sample A Male 3.1
Sample B Male 3.7
Sample C Female 4.6
Sample D Female 2.5
Ventral forebrain
nTPM: 3.7
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.4
Sample A Male 3.1
Sample B Male 4.7
Sample C Female 4.6
Sample D Female 2.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.0
68744725 Antisense, RP_050208_01_E04, Mouse strain C57BL/6J (56 days, male) 4.0
Pallidum
Expression energy: 4.0
68744725 Antisense, RP_050208_01_E04, Mouse strain C57BL/6J (56 days, male) 4.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.