MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.6 nTPM
HPA:18.6 nTPM
GTEx:26.1 nTPM
FANTOM5:49.6 Scaled Tags Per Million
Pig:20.2 nTPM
Mouse:20.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.2
2586 Male, age 75, left hemisphere 22.2
2666 Male, age 74, left hemisphere 18.9
2219 Male, age 76, both hemispheres 18.6
1827 Male, age 72, unknown 15.7
1833 Male, age 53, unknown 13.8
2828 Female, age 72, unknown 13.8
2411 Female, age 72, unknown 13.1
1830 Male, age 51, unknown 12.1
1870 Female, age 42, unknown 11.9
2019 Male, age 18, unknown 11.6
Dorsal raphe nucleus
nTPM: 13.5
2047 Male, age 72, unknown 14.7
1828 Male, age 53, unknown 14.5
2750 Male, age 76, both hemispheres 14.3
2298 Female, age 72, unknown 12.2
2016 Female, age 72, unknown 11.6
Inferior colliculus
nTPM: 14.5
1848 Female, age 42, unknown 16.2
2849 Male, age 72, unknown 15.6
2097 Female, age 72, unknown 14.9
1890 Male, age 53, unknown 11.4
Median raphe nucleus
nTPM: 14.0
2220 Male, age 76, midline 14.0
Pedunculopontine tegmental nucleus
nTPM: 14.6
1921 Female, age 85, both hemispheres 16.6
2334 Male, age 80, both hemispheres 15.5
2338 Male, age 61, both hemispheres 11.8
Periaquaductal grey, anterior
nTPM: 18.6
2502 Female, age 75, unknown 18.9
1947 Male, age 18, unknown 18.5
1795 Male, age 51, unknown 18.3
Periaquaductal grey, dorsal
nTPM: 12.5
1840 Male, age 53, unknown 15.9
2464 Female, age 72, unknown 12.3
1831 Male, age 72, unknown 12.0
2850 Male, age 76, both hemispheres 9.8
Periaquaductal grey, lateral
nTPM: 13.8
2272 Male, age 74, both hemispheres 16.4
2053 Male, age 18, unknown 14.0
2140 Male, age 76, both hemispheres 11.1
Pretectal area
nTPM: 14.3
2407 Male, age 75, both hemispheres 18.3
1816 Male, age 51, unknown 17.3
1817 Female, age 42, unknown 16.8
2224 Female, age 72, unknown 14.3
2825 Male, age 18, unknown 14.2
2007 Male, age 72, unknown 14.0
2667 Female, age 75, unknown 14.0
1944 Female, age 72, unknown 13.6
1815 Male, age 53, unknown 13.5
2316 Male, age 76, right hemisphere 11.1
2273 Male, age 74, both hemispheres 10.4
Red nucleus
nTPM: 15.2
2584 Male, age 75, left hemisphere 18.7
2785 Male, age 18, unknown 18.1
2769 Male, age 72, unknown 16.5
1865 Male, age 51, unknown 16.2
2227 Male, age 72, unknown 16.0
1821 Female, age 72, unknown 15.8
2503 Female, age 72, unknown 15.8
1904 Male, age 53, unknown 15.3
2588 Male, age 74, left hemisphere 13.0
1954 Female, age 42, unknown 12.6
2823 Male, age 76, right hemisphere 12.3
2725 Female, age 75, unknown 12.2
Substantia nigra
nTPM: 15.4
1916 Female, age 42, unknown 19.1
1851 Male, age 51, unknown 17.3
2583 Male, age 75, right hemisphere 16.5
2590 Female, age 75, unknown 16.4
1941 Male, age 53, unknown 16.1
2665 Male, age 74, both hemispheres 15.3
1889 Female, age 72, unknown 14.5
2699 Male, age 18, unknown 14.1
2409 Female, age 72, unknown 12.3
2241 Male, age 72, unknown 12.1
Superior colliculus
nTPM: 16.1
1796 Male, age 53, unknown 20.0
2668 Female, age 75, unknown 18.1
2664 Male, age 75, both hemispheres 17.9
2261 Male, age 18, unknown 17.8
1895 Male, age 76, right hemisphere 15.8
2087 Female, age 72, unknown 15.4
1839 Male, age 51, unknown 14.9
1995 Male, age 72, unknown 14.7
1913 Female, age 42, unknown 13.8
2587 Male, age 74, left hemisphere 12.6
Ventral tegmental area
nTPM: 15.0
2410 Female, age 72, unknown 18.4
2223 Female, age 72, unknown 18.1
1915 Female, age 42, unknown 14.8
2218 Male, age 76, both hemispheres 14.4
1942 Male, age 51, unknown 13.2
2021 Male, age 53, unknown 11.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.1
Samples: 139

Max nTPM: 49.1
Min nTPM: 12.8
Std nTPM: 6.2
Median nTPM: 25.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 49.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 42.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 41.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 41.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 38.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 38.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 38.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 37.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 36.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 36.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 35.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.6
FF:10158-103A5 76 years, female 49.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.2
Pig sample Sample description nTPM
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 23.3
Min nTPM: 17.1
Sample A Female 22.6
Sample B Female 17.1
Sample C Male 23.3
Sample D Male 17.5
Periaqueductal gray
nTPM: 15.1
Samples: 3

Max nTPM: 17.1
Min nTPM: 12.9
Sample B Female 15.4
Sample C Male 17.1
Sample D Male 12.9
Substantia nigra
nTPM: 17.6
Samples: 4

Max nTPM: 23.4
Min nTPM: 13.0
Sample A Female 23.4
Sample B Female 15.4
Sample C Male 18.7
Sample D Male 13.0
Superior colliculi
nTPM: 20.2
Samples: 4

Max nTPM: 22.3
Min nTPM: 17.7
Sample A Female 22.3
Sample B Female 19.2
Sample C Male 21.5
Sample D Male 17.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.2
Samples: 4

Max nTPM: 23.0
Min nTPM: 18.7
Sample A Male 23.0
Sample B Male 18.7
Sample C Female 19.2
Sample D Female 19.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
72081738 Antisense, RP_051019_01_A04, Mouse strain C57BL/6J (56 days, male) 0.0
71147765 Antisense, RP_050719_02_C04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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