BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:34.7 nTPM
HPA:34.7 nTPM
GTEx:29.7 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Pig:28.7 nTPM
Mouse:49.4 nTPM
Allen mouse:1.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043837
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.1
1854 Male, age 80, left hemisphere 34.5
1857 Female, age 85, left hemisphere 34.5
2846 Female, age 79, unknown 34.0
2290 Female, age 72, unknown 33.9
1781 Male, age 74, unknown 33.0
2288 Male, age 75, left hemisphere 31.9
2289 Male, age 61, right hemisphere 31.8
2481 Female, age 94, left hemisphere 31.1
Claustrum
nTPM: 32.9
2292 Female, age 85, both hemispheres 33.9
2645 Female, age 72, unknown 33.8
2198 Male, age 80, both hemispheres 33.4
1956 Male, age 74, unknown 33.1
2568 Male, age 61, both hemispheres 32.9
2196 Female, age 79, unknown 32.7
2491 Male, age 75, both hemispheres 32.5
2392 Female, age 94, both hemispheres 32.0
2284 Female, age 91, both hemispheres 31.7
Globus pallidus, externus
nTPM: 34.7
1996 Male, age 80, right hemisphere 35.7
2395 Male, age 75, both hemispheres 35.4
2772 Female, age 79, unknown 35.3
2646 Male, age 61, right hemisphere 34.0
2567 Female, age 72, unknown 33.1
Globus pallidus, internus
nTPM: 34.2
1818 Male, age 74, unknown 35.0
2037 Male, age 80, right hemisphere 34.9
2778 Female, age 91, both hemispheres 34.5
2483 Female, age 94, right hemisphere 34.3
2111 Female, age 85, right hemisphere 33.9
2566 Female, age 72, unknown 33.5
2287 Male, age 75, right hemisphere 33.3
Nucleus accumbens
nTPM: 32.9
2698 Female, age 72, unknown 34.5
1806 Female, age 85, left hemisphere 34.2
2732 Male, age 80, right hemisphere 33.5
1856 Female, age 91, right hemisphere 33.2
1783 Male, age 74, unknown 32.7
2286 Male, age 75, left hemisphere 32.7
2824 Male, age 61, right hemisphere 31.5
2391 Female, age 94, left hemisphere 30.6
Nucleus basalis of Meynert
nTPM: 33.6
2569 Male, age 61, both hemispheres 35.1
2393 Male, age 80, right hemisphere 33.2
2821 Male, age 75, both hemispheres 33.1
2484 Female, age 94, left hemisphere 33.0
Nucleus of the diagonal band
nTPM: 33.5
2775 Male, age 80, right hemisphere 34.6
1812 Female, age 91, both hemispheres 34.0
1979 Male, age 74, unknown 33.2
2029 Male, age 61, right hemisphere 33.0
2195 Female, age 85, both hemispheres 32.9
Olfactory tubercle
nTPM: 33.1
1846 Male, age 80, right hemisphere 35.1
2856 Male, age 75, right hemisphere 32.8
1998 Female, age 91, both hemispheres 32.4
2487 Female, age 94, left hemisphere 32.2
Putamen
nTPM: 32.8
2466 Female, age 79, unknown 33.2
1937 Female, age 91, right hemisphere 33.1
2482 Female, age 94, left hemisphere 32.9
2489 Female, age 72, unknown 32.8
1838 Male, age 80, right hemisphere 32.6
1829 Male, age 74, unknown 32.5
2647 Male, age 75, left hemisphere 32.4
Septal nuclei
nTPM: 33.2
2199 Male, age 80, right hemisphere 34.7
2031 Female, age 72, unknown 34.6
1960 Male, age 74, unknown 33.2
2009 Female, age 91, both hemispheres 32.7
2059 Female, age 85, both hemispheres 32.7
2629 Female, age 94, right hemisphere 32.2
2394 Male, age 61, left hemisphere 32.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.1
Samples: 246

Max nTPM: 46.9
Min nTPM: 12.0
Std nTPM: 5.1
Median nTPM: 26.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 46.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 41.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 41.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 40.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 39.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 38.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 38.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 38.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 37.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 37.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 37.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.7
Samples: 246

Max nTPM: 58.3
Min nTPM: 16.2
Std nTPM: 6.0
Median nTPM: 25.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 58.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 46.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 45.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 43.9
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 43.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 41.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 39.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 39.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 38.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 38.6
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 38.6
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Brain - Putamen (basal ganglia)
Average nTPM: 29.7
Samples: 205

Max nTPM: 46.9
Min nTPM: 14.4
Std nTPM: 5.2
Median nTPM: 29.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 46.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 43.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 42.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 41.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 40.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 40.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 39.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 39.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 39.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 39.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 38.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.5
FF:10164-103B2 76 years, female 18.5
Globus pallidus
Scaled Tags Per Million: 11.6
FF:10161-103A8 76 years, female 14.6
FF:10175-103C4 60 years, female 8.6
Nucleus accumbens
Scaled Tags Per Million: 15.8
FF:10037-101F1 23-56 years, mixed 15.8
Putamen
Scaled Tags Per Million: 19.4
FF:10176-103C5 60 years, female 19.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 28.7
Pig sample Sample description nTPM
Caudate
nTPM: 27.2
Samples: 4

Max nTPM: 29.8
Min nTPM: 25.1
Sample A Female 25.1
Sample B Female 29.8
Sample C Male 28.4
Sample D Male 25.5
Putamen
nTPM: 28.7
Samples: 4

Max nTPM: 31.8
Min nTPM: 23.7
Sample A Female 29.8
Sample B Female 23.7
Sample C Male 31.8
Sample D Male 29.4
Septum
nTPM: 28.2
Samples: 4

Max nTPM: 30.0
Min nTPM: 24.6
Sample A Female 30.0
Sample B Female 24.6
Sample C Male 29.3
Sample D Male 28.8
Ventral pallidum
nTPM: 25.6
Samples: 4

Max nTPM: 28.8
Min nTPM: 21.0
Sample A Female 21.0
Sample B Female 28.8
Sample C Male 27.7
Sample D Male 25.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 49.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 49.4
Samples: 4

Max nTPM: 54.4
Min nTPM: 42.7
Sample A Male 48.9
Sample B Male 54.4
Sample C Female 42.7
Sample D Female 51.6
Septum
nTPM: 47.5
Samples: 4

Max nTPM: 50.1
Min nTPM: 43.8
Sample A Male 43.8
Sample B Male 50.1
Sample C Female 49.3
Sample D Female 46.6
Ventral forebrain
nTPM: 47.0
Samples: 4

Max nTPM: 51.9
Min nTPM: 44.5
Sample A Male 45.7
Sample B Male 45.7
Sample C Female 51.9
Sample D Female 44.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
632486 Antisense, RP_040907_01_D04, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 1.1
632486 Antisense, RP_040907_01_D04, Mouse strain C57BL/6J (56 days, male) 1.1

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