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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:763.9 nTPM
HPA:763.9 nTPM
FANTOM5:1299.0 Scaled Tags Per Million
Pig:152.0 nTPM
Allen mouse:19.6 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 763.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 468.5
1984 Male, age 76, both hemispheres 488.8
2301 Female, age 85, both hemispheres 480.5
2188 Female, age 91, both hemispheres 461.3
2090 Male, age 80, both hemispheres 443.5
Dorsal cochlear nucleus
nTPM: 500.5
2058 Male, age 76, both hemispheres 556.3
2370 Male, age 61, both hemispheres 523.5
2187 Female, age 91, both hemispheres 520.7
2802 Male, age 74, right hemisphere 497.3
2378 Male, age 80, both hemispheres 404.7
Dorsal tegmental nucleus
nTPM: 524.2
2083 Male, age 80, both hemispheres 580.3
2358 Male, age 61, both hemispheres 543.4
2326 Male, age 74, both hemispheres 491.2
1936 Male, age 76, left hemisphere 481.8
Dorsolateral tegmental area
nTPM: 502.8
2654 Male, age 80, both hemispheres 562.6
2141 Male, age 76, both hemispheres 529.5
2751 Female, age 85, both hemispheres 521.0
2360 Male, age 74, both hemispheres 496.7
2337 Male, age 61, both hemispheres 404.2
Kolliker-Fuse nucleus
nTPM: 556.8
2163 Male, age 80, both hemispheres 674.0
2793 Female, age 91, left hemisphere 501.3
2315 Male, age 76, right hemisphere 495.2
Lateral lemniscal nuclei
nTPM: 658.6
2169 Male, age 76, both hemispheres 808.0
2036 Male, age 80, both hemispheres 800.5
2746 Female, age 85, left hemisphere 671.5
2453 Male, age 74, right hemisphere 546.4
2320 Female, age 91, left hemisphere 466.8
Lateral parabrachial nucleus
nTPM: 604.7
2139 Female, age 85, right hemisphere 768.4
2790 Male, age 61, both hemispheres 641.7
2013 Male, age 80, both hemispheres 577.5
2792 Male, age 76, both hemispheres 431.0
Lateral vestibular nucleus
nTPM: 570.2
2184 Male, age 76, both hemispheres 641.1
2311 Male, age 80, both hemispheres 499.4
Locus coeruleus
nTPM: 707.8
2123 Female, age 91, both hemispheres 899.2
2014 Male, age 55, unknown 780.2
2720 Male, age 74, both hemispheres 706.8
2317 Female, age 72, unknown 686.6
1980 Male, age 76, both hemispheres 657.5
2788 Male, age 74, unknown 621.7
2162 Male, age 80, both hemispheres 602.5
Medial olivary nucleus
nTPM: 442.6
2138 Female, age 91, both hemispheres 527.5
2851 Male, age 80, both hemispheres 449.3
1962 Male, age 76, both hemispheres 429.7
1943 Male, age 61, both hemispheres 364.0
Medial parabrachial nucleus
nTPM: 561.6
2156 Male, age 61, both hemispheres 620.0
2170 Female, age 91, both hemispheres 603.7
2854 Male, age 80, both hemispheres 598.0
2786 Male, age 76, both hemispheres 503.7
2463 Female, age 85, right hemisphere 482.8
Medial periolivary nuclei
nTPM: 656.9
2171 Female, age 85, both hemispheres 887.5
2063 Male, age 76, both hemispheres 871.1
2791 Male, age 74, right hemisphere 624.3
2081 Male, age 80, both hemispheres 491.8
2458 Female, age 91, both hemispheres 409.8
Motor facial nucleus
nTPM: 631.3
2062 Male, age 76, both hemispheres 927.2
2365 Male, age 74, right hemisphere 668.1
2327 Male, age 80, both hemispheres 600.0
2697 Female, age 85, both hemispheres 570.1
2126 Male, age 61, both hemispheres 534.2
2795 Female, age 91, both hemispheres 488.2
Motor trigeminal nucleus
nTPM: 537.8
2079 Male, age 80, both hemispheres 698.7
2335 Male, age 61, both hemispheres 552.3
2560 Male, age 74, both hemispheres 514.7
2309 Male, age 76, both hemispheres 497.2
2321 Female, age 91, both hemispheres 425.9
Nuclei of the trapezoid body
nTPM: 739.4
1983 Male, age 76, both hemispheres 900.8
2735 Female, age 85, both hemispheres 887.4
2159 Male, age 61, both hemispheres 882.6
2166 Male, age 80, both hemispheres 588.7
2368 Female, age 91, both hemispheres 437.4
Paramedian reticular nucleus
nTPM: 633.8
2050 Female, age 85, both hemispheres 756.2
2313 Male, age 61, both hemispheres 671.9
2057 Male, age 80, both hemispheres 663.1
2052 Male, age 76, both hemispheres 444.2
Pontine nuclei
nTPM: 763.9
2787 Female, age 85, both hemispheres 1015.5
2727 Male, age 61, right hemisphere 984.6
1863 Male, age 55, unknown 963.7
1968 Male, age 76, left hemisphere 812.7
2109 Female, age 72, unknown 778.5
2115 Male, age 80, left hemisphere 560.9
2454 Male, age 74, left hemisphere 529.5
2319 Female, age 91, both hemispheres 466.0
Pontine raphe nucleus
nTPM: 653.2
2122 Female, age 85, midline 735.9
2853 Male, age 76, midline 570.5
Posteroventral cochlear nucleus
nTPM: 495.6
2752 Female, age 85, both hemispheres 656.3
2070 Male, age 76, both hemispheres 535.1
2371 Male, age 61, both hemispheres 511.1
2135 Female, age 91, both hemispheres 392.4
2341 Male, age 80, both hemispheres 383.2
Principal sensory trigeminal nucleus
nTPM: 688.8
2158 Male, age 61, both hemispheres 948.8
2008 Male, age 80, left hemisphere 763.5
2324 Male, age 76, both hemispheres 589.5
2367 Female, age 91, left hemisphere 453.3
Reticular pontine nucleus, caudal
nTPM: 579.4
2332 Male, age 80, right hemisphere 699.1
2092 Male, age 76, both hemispheres 686.6
2559 Male, age 74, both hemispheres 491.6
2457 Female, age 91, both hemispheres 440.3
Reticular pontine nucleus, oral
nTPM: 559.6
2012 Female, age 85, both hemispheres 660.5
2361 Male, age 74, both hemispheres 594.5
1939 Male, age 80, both hemispheres 566.0
2167 Male, age 76, both hemispheres 522.2
2366 Female, age 91, both hemispheres 454.9
Reticulotegmental nucleus
nTPM: 553.7
2325 Male, age 76, both hemispheres 656.1
2333 Male, age 80, both hemispheres 545.3
2452 Male, age 74, both hemispheres 515.1
2322 Female, age 91, both hemispheres 498.2
Spinal trigeminal nucleus, oral
nTPM: 553.8
2737 Female, age 85, both hemispheres 585.8
2164 Male, age 80, both hemispheres 581.5
1978 Male, age 76, both hemispheres 494.1
Subcoeruleus area
nTPM: 575.3
2323 Female, age 91, left hemisphere 643.1
1958 Male, age 80, both hemispheres 641.5
2089 Male, age 76, left hemisphere 633.1
2451 Male, age 74, both hemispheres 484.4
2369 Female, age 85, left hemisphere 474.4
Superior olive
nTPM: 627.8
1875 Female, age 85, both hemispheres 771.5
2364 Male, age 74, right hemisphere 667.5
2020 Male, age 76, both hemispheres 640.5
2329 Male, age 80, right hemisphere 585.8
2561 Female, age 91, both hemispheres 473.8
Superior vestibular nucleus
nTPM: 549.7
2383 Male, age 74, both hemispheres 582.5
2015 Male, age 80, both hemispheres 539.2
2061 Male, age 76, both hemispheres 527.5
Ventral periolivary nuclei
nTPM: 684.8
2130 Female, age 85, both hemispheres 865.1
2165 Male, age 80, both hemispheres 799.6
2023 Male, age 76, both hemispheres 595.4
2794 Female, age 91, left hemisphere 479.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 569.4
1959 Male, age 76, both hemispheres 679.5
2449 Male, age 74, both hemispheres 601.9
2840 Female, age 85, both hemispheres 601.7
2161 Male, age 80, both hemispheres 576.0
2359 Male, age 61, both hemispheres 565.9
2456 Female, age 91, both hemispheres 391.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1299.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1174.2
FF:10182-103D2 60 years, female 1345.7
FF:10165-103B3 76 years, female 1002.6
Pons
Scaled Tags Per Million: 1299.0
FF:10033-101E6 18-54 years, mixed 1299.0

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 152.0
Pig sample Sample description nTPM
Pons
nTPM: 152.1
Samples: 4

Max nTPM: 182.8
Min nTPM: 112.9
Sample A Female 182.8
Sample B Female 112.9
Sample C Male 160.4
Sample D Male 152.1

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.6
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 19.6
77620804 Antisense, RP_070129_03_H04, Mouse strain C57BL/6J (56 days, male) 19.6

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by the Knut & Alice Wallenberg Foundation.