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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:545.5 nTPM
HPA:545.5 nTPM
GTEx:483.6 nTPM
FANTOM5:718.3 Scaled Tags Per Million
Pig:131.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 545.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 545.5
2565 Male, age 75, midline 643.8
1981 Female, age 72, midline 601.1
2194 Female, age 79, both hemispheres 570.4
2816 Male, age 47, midline 478.1
2048 Male, age 55, midline 434.1
Cervical spinal cord, dorsal horn
nTPM: 523.3
2173 Female, age 72, unknown 653.2
2069 Male, age 47, both hemispheres 541.2
2296 Male, age 66, both hemispheres 510.1
2297 Male, age 75, both hemispheres 499.7
2721 Male, age 90, both hemispheres 474.4
1877 Male, age 55, unknown 460.9
Cervical spinal cord, ventral horn
nTPM: 541.0
2480 Male, age 75, both hemispheres 559.1
2295 Male, age 66, both hemispheres 548.9
2820 Female, age 79, both hemispheres 543.1
2068 Male, age 55, unknown 538.9
2098 Female, age 72, unknown 537.4
2809 Male, age 90, both hemispheres 518.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 483.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 483.6
Samples: 159

Max nTPM: 887.0
Min nTPM: 300.9
Std nTPM: 103.8
Median nTPM: 465.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 887.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 858.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 818.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 773.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 756.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 754.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 727.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 699.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 675.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 673.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 672.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 654.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 646.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 644.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 613.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 613.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 612.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 611.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 593.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 585.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 584.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 572.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 569.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 569.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 566.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 564.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 555.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 551.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 545.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 542.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 541.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 539.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 539.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 538.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 537.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 536.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 535.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 534.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 533.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 526.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 524.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 524.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 523.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 523.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 523.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 520.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 517.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 508.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 508.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 507.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 507.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 505.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 505.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 502.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 500.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 500.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 497.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 497.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 496.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 496.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 495.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 495.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 492.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 488.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 487.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 486.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 484.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 483.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 483.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 482.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 476.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 473.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 473.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 471.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 471.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 468.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 468.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 465.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 465.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 465.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 464.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 463.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 461.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 460.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 458.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 455.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 455.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 454.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 454.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 451.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 451.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 451.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 449.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 447.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 447.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 446.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 445.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 443.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 442.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 440.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 439.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 439.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 438.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 437.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 436.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 434.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 434.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 433.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 433.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 431.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 427.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 426.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 426.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 425.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 424.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 423.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 420.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 419.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 418.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 412.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 411.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 411.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 410.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 410.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 410.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 409.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 408.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 408.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 406.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 404.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 402.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 400.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 398.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 398.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 395.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 395.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 391.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 378.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 377.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 377.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 376.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 376.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 373.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 372.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 372.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 367.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 366.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 364.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 362.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 361.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 351.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 342.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 336.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 331.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 324.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 324.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 323.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 311.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 300.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 718.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 718.3
FF:10181-103D1 60 years, female 982.7
FF:10159-103A6 76 years, female 453.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 131.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 104.9
Samples: 4

Max nTPM: 121.7
Min nTPM: 97.0
Sample A Female 97.0
Sample B Female 97.8
Sample C Male 121.7
Sample D Male 103.2
Ventral spinal cord
nTPM: 131.2
Samples: 4

Max nTPM: 147.9
Min nTPM: 106.0
Sample A Female 130.0
Sample B Female 147.9
Sample C Male 140.8
Sample D Male 106.0

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