We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene namei
Official gene symbol, which is typically a short form of the gene name, according to HGNC.
Cancer-related genes Disease related genes Human disease related genes Plasma proteins Transcription factors
Predicted locationi
All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.
Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).
The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.
Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.
Chromosome
12
Cytoband
q14.3
Chromosome location (bp)
65824460 - 65966291
Number of transcriptsi
Number of protein-coding transcripts from the gene as defined by Ensembl.
The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).
In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl
The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.
At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.
Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).
The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).
If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.
Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
HMGA2-201
HMGA2-202
HMGA2-203
HMGA2-204
HMGA2-205
HMGA2-206
HMGA2-210
PROTEIN INFORMATIONi
The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.
The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.
The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
P52926 [Direct mapping] High mobility group protein HMGI-C
Show all
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Transcription factors beta-Sheet binding to DNA Cancer-related genes Candidate cancer biomarkers COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Translocations Disease related genes Human disease related genes Reproductive system diseases Reproductive system diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II] GO:0000228 [nuclear chromosome] GO:0000785 [chromatin] GO:0000976 [transcription regulatory region sequence-specific DNA binding] GO:0001837 [epithelial to mesenchymal transition] GO:0002062 [chondrocyte differentiation] GO:0003131 [mesodermal-endodermal cell signaling] GO:0003677 [DNA binding] GO:0003680 [minor groove of adenine-thymine-rich DNA binding] GO:0003712 [transcription coregulator activity] GO:0003714 [transcription corepressor activity] GO:0003906 [DNA-(apurinic or apyrimidinic site) endonuclease activity] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0006284 [base-excision repair] GO:0006325 [chromatin organization] GO:0006355 [regulation of transcription, DNA-templated] GO:0007049 [cell cycle] GO:0007095 [mitotic G2 DNA damage checkpoint] GO:0007275 [multicellular organism development] GO:0008134 [transcription factor binding] GO:0008301 [DNA binding, bending] GO:0009615 [response to virus] GO:0010564 [regulation of cell cycle process] GO:0010628 [positive regulation of gene expression] GO:0030261 [chromosome condensation] GO:0031052 [chromosome breakage] GO:0031492 [nucleosomal DNA binding] GO:0031507 [heterochromatin assembly] GO:0032993 [protein-DNA complex] GO:0035497 [cAMP response element binding] GO:0035500 [MH2 domain binding] GO:0035501 [MH1 domain binding] GO:0035978 [histone H2A-S139 phosphorylation] GO:0035985 [senescence-associated heterochromatin focus] GO:0035986 [senescence-associated heterochromatin focus assembly] GO:0035987 [endodermal cell differentiation] GO:0035988 [chondrocyte proliferation] GO:0040008 [regulation of growth] GO:0042769 [DNA damage response, detection of DNA damage] GO:0043065 [positive regulation of apoptotic process] GO:0043066 [negative regulation of apoptotic process] GO:0043392 [negative regulation of DNA binding] GO:0043922 [negative regulation by host of viral transcription] GO:0045444 [fat cell differentiation] GO:0045766 [positive regulation of angiogenesis] GO:0045869 [negative regulation of single stranded viral RNA replication via double stranded DNA intermediate] GO:0045892 [negative regulation of transcription, DNA-templated] GO:0045893 [positive regulation of transcription, DNA-templated] GO:0045944 [positive regulation of transcription by RNA polymerase II] GO:0046332 [SMAD binding] GO:0048333 [mesodermal cell differentiation] GO:0048762 [mesenchymal cell differentiation] GO:0048863 [stem cell differentiation] GO:0051301 [cell division] GO:0051575 [5'-deoxyribose-5-phosphate lyase activity] GO:0070742 [C2H2 zinc finger domain binding] GO:0071141 [SMAD protein complex] GO:0071158 [positive regulation of cell cycle arrest] GO:0071864 [positive regulation of cell proliferation in bone marrow] GO:0071902 [positive regulation of protein serine/threonine kinase activity] GO:0090402 [oncogene-induced cell senescence] GO:2000036 [regulation of stem cell population maintenance] GO:2000648 [positive regulation of stem cell proliferation] GO:2000685 [positive regulation of cellular response to X-ray] GO:2000773 [negative regulation of cellular senescence] GO:2000774 [positive regulation of cellular senescence] GO:2001022 [positive regulation of response to DNA damage stimulus] GO:2001033 [negative regulation of double-strand break repair via nonhomologous end joining] GO:2001038 [regulation of cellular response to drug]
F5H2A4 [Direct mapping] High mobility group protein HMGI-C
Show all
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Translocations Human disease related genes Reproductive system diseases Reproductive system diseases Protein evidence (Ezkurdia et al 2014)
P52926 [Direct mapping] High mobility group protein HMGI-C
Show all
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Transcription factors beta-Sheet binding to DNA Cancer-related genes Candidate cancer biomarkers COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Translocations Disease related genes Human disease related genes Reproductive system diseases Reproductive system diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II] GO:0000228 [nuclear chromosome] GO:0000785 [chromatin] GO:0000976 [transcription regulatory region sequence-specific DNA binding] GO:0001837 [epithelial to mesenchymal transition] GO:0002062 [chondrocyte differentiation] GO:0003131 [mesodermal-endodermal cell signaling] GO:0003677 [DNA binding] GO:0003680 [minor groove of adenine-thymine-rich DNA binding] GO:0003712 [transcription coregulator activity] GO:0003714 [transcription corepressor activity] GO:0003906 [DNA-(apurinic or apyrimidinic site) endonuclease activity] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0006284 [base-excision repair] GO:0006325 [chromatin organization] GO:0006355 [regulation of transcription, DNA-templated] GO:0007049 [cell cycle] GO:0007095 [mitotic G2 DNA damage checkpoint] GO:0007275 [multicellular organism development] GO:0008134 [transcription factor binding] GO:0008301 [DNA binding, bending] GO:0009615 [response to virus] GO:0010564 [regulation of cell cycle process] GO:0010628 [positive regulation of gene expression] GO:0030261 [chromosome condensation] GO:0031052 [chromosome breakage] GO:0031492 [nucleosomal DNA binding] GO:0031507 [heterochromatin assembly] GO:0032993 [protein-DNA complex] GO:0035497 [cAMP response element binding] GO:0035500 [MH2 domain binding] GO:0035501 [MH1 domain binding] GO:0035978 [histone H2A-S139 phosphorylation] GO:0035985 [senescence-associated heterochromatin focus] GO:0035986 [senescence-associated heterochromatin focus assembly] GO:0035987 [endodermal cell differentiation] GO:0035988 [chondrocyte proliferation] GO:0040008 [regulation of growth] GO:0042769 [DNA damage response, detection of DNA damage] GO:0043065 [positive regulation of apoptotic process] GO:0043066 [negative regulation of apoptotic process] GO:0043392 [negative regulation of DNA binding] GO:0043922 [negative regulation by host of viral transcription] GO:0045444 [fat cell differentiation] GO:0045766 [positive regulation of angiogenesis] GO:0045869 [negative regulation of single stranded viral RNA replication via double stranded DNA intermediate] GO:0045892 [negative regulation of transcription, DNA-templated] GO:0045893 [positive regulation of transcription, DNA-templated] GO:0045944 [positive regulation of transcription by RNA polymerase II] GO:0046332 [SMAD binding] GO:0048333 [mesodermal cell differentiation] GO:0048762 [mesenchymal cell differentiation] GO:0048863 [stem cell differentiation] GO:0051301 [cell division] GO:0051575 [5'-deoxyribose-5-phosphate lyase activity] GO:0070742 [C2H2 zinc finger domain binding] GO:0071141 [SMAD protein complex] GO:0071158 [positive regulation of cell cycle arrest] GO:0071864 [positive regulation of cell proliferation in bone marrow] GO:0071902 [positive regulation of protein serine/threonine kinase activity] GO:0090402 [oncogene-induced cell senescence] GO:2000036 [regulation of stem cell population maintenance] GO:2000648 [positive regulation of stem cell proliferation] GO:2000685 [positive regulation of cellular response to X-ray] GO:2000773 [negative regulation of cellular senescence] GO:2000774 [positive regulation of cellular senescence] GO:2001022 [positive regulation of response to DNA damage stimulus] GO:2001033 [negative regulation of double-strand break repair via nonhomologous end joining] GO:2001038 [regulation of cellular response to drug]
P52926 [Direct mapping] High mobility group protein HMGI-C
Show all
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Transcription factors beta-Sheet binding to DNA Cancer-related genes Candidate cancer biomarkers COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Translocations Disease related genes Human disease related genes Reproductive system diseases Reproductive system diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II] GO:0000228 [nuclear chromosome] GO:0000785 [chromatin] GO:0000976 [transcription regulatory region sequence-specific DNA binding] GO:0001837 [epithelial to mesenchymal transition] GO:0002062 [chondrocyte differentiation] GO:0003131 [mesodermal-endodermal cell signaling] GO:0003677 [DNA binding] GO:0003680 [minor groove of adenine-thymine-rich DNA binding] GO:0003712 [transcription coregulator activity] GO:0003714 [transcription corepressor activity] GO:0003906 [DNA-(apurinic or apyrimidinic site) endonuclease activity] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0006284 [base-excision repair] GO:0006325 [chromatin organization] GO:0006355 [regulation of transcription, DNA-templated] GO:0007049 [cell cycle] GO:0007095 [mitotic G2 DNA damage checkpoint] GO:0007275 [multicellular organism development] GO:0008134 [transcription factor binding] GO:0008301 [DNA binding, bending] GO:0009615 [response to virus] GO:0010564 [regulation of cell cycle process] GO:0010628 [positive regulation of gene expression] GO:0030261 [chromosome condensation] GO:0031052 [chromosome breakage] GO:0031492 [nucleosomal DNA binding] GO:0031507 [heterochromatin assembly] GO:0032993 [protein-DNA complex] GO:0035497 [cAMP response element binding] GO:0035500 [MH2 domain binding] GO:0035501 [MH1 domain binding] GO:0035978 [histone H2A-S139 phosphorylation] GO:0035985 [senescence-associated heterochromatin focus] GO:0035986 [senescence-associated heterochromatin focus assembly] GO:0035987 [endodermal cell differentiation] GO:0035988 [chondrocyte proliferation] GO:0040008 [regulation of growth] GO:0042769 [DNA damage response, detection of DNA damage] GO:0043065 [positive regulation of apoptotic process] GO:0043066 [negative regulation of apoptotic process] GO:0043392 [negative regulation of DNA binding] GO:0043922 [negative regulation by host of viral transcription] GO:0045444 [fat cell differentiation] GO:0045766 [positive regulation of angiogenesis] GO:0045869 [negative regulation of single stranded viral RNA replication via double stranded DNA intermediate] GO:0045892 [negative regulation of transcription, DNA-templated] GO:0045893 [positive regulation of transcription, DNA-templated] GO:0045944 [positive regulation of transcription by RNA polymerase II] GO:0046332 [SMAD binding] GO:0048333 [mesodermal cell differentiation] GO:0048762 [mesenchymal cell differentiation] GO:0048863 [stem cell differentiation] GO:0051301 [cell division] GO:0051575 [5'-deoxyribose-5-phosphate lyase activity] GO:0070742 [C2H2 zinc finger domain binding] GO:0071141 [SMAD protein complex] GO:0071158 [positive regulation of cell cycle arrest] GO:0071864 [positive regulation of cell proliferation in bone marrow] GO:0071902 [positive regulation of protein serine/threonine kinase activity] GO:0090402 [oncogene-induced cell senescence] GO:2000036 [regulation of stem cell population maintenance] GO:2000648 [positive regulation of stem cell proliferation] GO:2000685 [positive regulation of cellular response to X-ray] GO:2000773 [negative regulation of cellular senescence] GO:2000774 [positive regulation of cellular senescence] GO:2001022 [positive regulation of response to DNA damage stimulus] GO:2001033 [negative regulation of double-strand break repair via nonhomologous end joining] GO:2001038 [regulation of cellular response to drug]
P52926 [Direct mapping] High mobility group protein HMGI-C
Show all
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Transcription factors beta-Sheet binding to DNA Cancer-related genes Candidate cancer biomarkers COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Translocations Disease related genes Human disease related genes Reproductive system diseases Reproductive system diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II] GO:0000228 [nuclear chromosome] GO:0000785 [chromatin] GO:0000976 [transcription regulatory region sequence-specific DNA binding] GO:0001837 [epithelial to mesenchymal transition] GO:0002062 [chondrocyte differentiation] GO:0003131 [mesodermal-endodermal cell signaling] GO:0003677 [DNA binding] GO:0003680 [minor groove of adenine-thymine-rich DNA binding] GO:0003712 [transcription coregulator activity] GO:0003714 [transcription corepressor activity] GO:0003906 [DNA-(apurinic or apyrimidinic site) endonuclease activity] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0006284 [base-excision repair] GO:0006325 [chromatin organization] GO:0006355 [regulation of transcription, DNA-templated] GO:0007049 [cell cycle] GO:0007095 [mitotic G2 DNA damage checkpoint] GO:0007275 [multicellular organism development] GO:0008134 [transcription factor binding] GO:0008301 [DNA binding, bending] GO:0009615 [response to virus] GO:0010564 [regulation of cell cycle process] GO:0010628 [positive regulation of gene expression] GO:0030261 [chromosome condensation] GO:0031052 [chromosome breakage] GO:0031492 [nucleosomal DNA binding] GO:0031507 [heterochromatin assembly] GO:0032993 [protein-DNA complex] GO:0035497 [cAMP response element binding] GO:0035500 [MH2 domain binding] GO:0035501 [MH1 domain binding] GO:0035978 [histone H2A-S139 phosphorylation] GO:0035985 [senescence-associated heterochromatin focus] GO:0035986 [senescence-associated heterochromatin focus assembly] GO:0035987 [endodermal cell differentiation] GO:0035988 [chondrocyte proliferation] GO:0040008 [regulation of growth] GO:0042769 [DNA damage response, detection of DNA damage] GO:0043065 [positive regulation of apoptotic process] GO:0043066 [negative regulation of apoptotic process] GO:0043392 [negative regulation of DNA binding] GO:0043922 [negative regulation by host of viral transcription] GO:0045444 [fat cell differentiation] GO:0045766 [positive regulation of angiogenesis] GO:0045869 [negative regulation of single stranded viral RNA replication via double stranded DNA intermediate] GO:0045892 [negative regulation of transcription, DNA-templated] GO:0045893 [positive regulation of transcription, DNA-templated] GO:0045944 [positive regulation of transcription by RNA polymerase II] GO:0046332 [SMAD binding] GO:0048333 [mesodermal cell differentiation] GO:0048762 [mesenchymal cell differentiation] GO:0048863 [stem cell differentiation] GO:0051301 [cell division] GO:0051575 [5'-deoxyribose-5-phosphate lyase activity] GO:0070742 [C2H2 zinc finger domain binding] GO:0071141 [SMAD protein complex] GO:0071158 [positive regulation of cell cycle arrest] GO:0071864 [positive regulation of cell proliferation in bone marrow] GO:0071902 [positive regulation of protein serine/threonine kinase activity] GO:0090402 [oncogene-induced cell senescence] GO:2000036 [regulation of stem cell population maintenance] GO:2000648 [positive regulation of stem cell proliferation] GO:2000685 [positive regulation of cellular response to X-ray] GO:2000773 [negative regulation of cellular senescence] GO:2000774 [positive regulation of cellular senescence] GO:2001022 [positive regulation of response to DNA damage stimulus] GO:2001033 [negative regulation of double-strand break repair via nonhomologous end joining] GO:2001038 [regulation of cellular response to drug]
F5H6H0 [Direct mapping] High mobility group protein HMGI-C
Show all
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Translocations Human disease related genes Reproductive system diseases Reproductive system diseases Protein evidence (Ezkurdia et al 2014)
F5H2U8 [Direct mapping] High mobility group protein HMGI-C
Show all
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Translocations Human disease related genes Reproductive system diseases Reproductive system diseases Protein evidence (Ezkurdia et al 2014)
The Human Protein Atlas project is funded
