MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:153.8 nTPM
HPA:153.8 nTPM
GTEx:238.8 nTPM
FANTOM5:284.4 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:14.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 153.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 145.7
2411 Female, age 72, unknown 160.5
2666 Male, age 74, left hemisphere 156.5
1833 Male, age 53, unknown 147.8
1827 Male, age 72, unknown 147.2
1870 Female, age 42, unknown 146.3
1830 Male, age 51, unknown 144.7
2828 Female, age 72, unknown 140.7
2219 Male, age 76, both hemispheres 140.0
2019 Male, age 18, unknown 139.7
2586 Male, age 75, left hemisphere 134.0
Dorsal raphe nucleus
nTPM: 148.8
2047 Male, age 72, unknown 157.8
1828 Male, age 53, unknown 150.4
2298 Female, age 72, unknown 147.8
2750 Male, age 76, both hemispheres 145.5
2016 Female, age 72, unknown 142.4
Inferior colliculus
nTPM: 137.7
1848 Female, age 42, unknown 142.6
1890 Male, age 53, unknown 141.8
2849 Male, age 72, unknown 134.4
2097 Female, age 72, unknown 131.8
Median raphe nucleus
nTPM: 150.5
2220 Male, age 76, midline 150.5
Pedunculopontine tegmental nucleus
nTPM: 150.7
2334 Male, age 80, both hemispheres 156.0
1921 Female, age 85, both hemispheres 148.8
2338 Male, age 61, both hemispheres 147.3
Periaquaductal grey, anterior
nTPM: 149.7
1947 Male, age 18, unknown 165.8
2502 Female, age 75, unknown 143.3
1795 Male, age 51, unknown 140.1
Periaquaductal grey, dorsal
nTPM: 137.8
1840 Male, age 53, unknown 141.7
2850 Male, age 76, both hemispheres 140.8
1831 Male, age 72, unknown 134.9
2464 Female, age 72, unknown 133.8
Periaquaductal grey, lateral
nTPM: 136.5
2272 Male, age 74, both hemispheres 139.8
2053 Male, age 18, unknown 139.7
2140 Male, age 76, both hemispheres 129.9
Pretectal area
nTPM: 139.4
1944 Female, age 72, unknown 151.2
1817 Female, age 42, unknown 146.9
2007 Male, age 72, unknown 144.5
1815 Male, age 53, unknown 142.9
1816 Male, age 51, unknown 142.6
2825 Male, age 18, unknown 139.5
2407 Male, age 75, both hemispheres 137.4
2273 Male, age 74, both hemispheres 136.3
2224 Female, age 72, unknown 136.0
2667 Female, age 75, unknown 129.1
2316 Male, age 76, right hemisphere 126.9
Red nucleus
nTPM: 151.5
2725 Female, age 75, unknown 172.8
2588 Male, age 74, left hemisphere 172.7
1821 Female, age 72, unknown 161.3
2503 Female, age 72, unknown 157.0
1954 Female, age 42, unknown 151.5
1865 Male, age 51, unknown 147.7
1904 Male, age 53, unknown 147.2
2227 Male, age 72, unknown 145.5
2769 Male, age 72, unknown 145.5
2584 Male, age 75, left hemisphere 143.2
2785 Male, age 18, unknown 138.5
2823 Male, age 76, right hemisphere 134.7
Substantia nigra
nTPM: 153.8
1916 Female, age 42, unknown 167.5
1851 Male, age 51, unknown 164.1
2241 Male, age 72, unknown 157.3
1941 Male, age 53, unknown 156.2
2665 Male, age 74, both hemispheres 153.7
1889 Female, age 72, unknown 153.0
2699 Male, age 18, unknown 152.0
2409 Female, age 72, unknown 150.0
2590 Female, age 75, unknown 149.3
2583 Male, age 75, right hemisphere 134.6
Superior colliculus
nTPM: 140.1
2587 Male, age 74, left hemisphere 158.0
2668 Female, age 75, unknown 142.8
1839 Male, age 51, unknown 141.7
2087 Female, age 72, unknown 140.0
2261 Male, age 18, unknown 140.0
1913 Female, age 42, unknown 139.5
1796 Male, age 53, unknown 137.8
1895 Male, age 76, right hemisphere 137.7
1995 Male, age 72, unknown 137.0
2664 Male, age 75, both hemispheres 126.9
Ventral tegmental area
nTPM: 151.2
2410 Female, age 72, unknown 172.4
1915 Female, age 42, unknown 155.5
2218 Male, age 76, both hemispheres 148.4
2223 Female, age 72, unknown 147.6
1942 Male, age 51, unknown 147.3
2021 Male, age 53, unknown 136.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 238.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 238.8
Samples: 139

Max nTPM: 472.7
Min nTPM: 125.8
Std nTPM: 56.4
Median nTPM: 233.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 472.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 443.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 371.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 360.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 351.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 349.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 345.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 345.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 339.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 332.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 328.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 284.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 284.4
FF:10158-103A5 76 years, female 284.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.9
Pig sample Sample description nTPM
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 41.3
Min nTPM: 24.5
Sample A Female 41.3
Sample B Female 31.9
Sample C Male 30.0
Sample D Male 24.5
Periaqueductal gray
nTPM: 26.3
Samples: 3

Max nTPM: 29.2
Min nTPM: 24.6
Sample B Female 24.6
Sample C Male 29.2
Sample D Male 25.0
Substantia nigra
nTPM: 30.5
Samples: 4

Max nTPM: 41.5
Min nTPM: 24.6
Sample A Female 41.5
Sample B Female 24.6
Sample C Male 29.5
Sample D Male 26.4
Superior colliculi
nTPM: 31.8
Samples: 4

Max nTPM: 36.8
Min nTPM: 27.6
Sample A Female 36.8
Sample B Female 27.6
Sample C Male 33.6
Sample D Male 29.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.8
Samples: 4

Max nTPM: 15.3
Min nTPM: 13.8
Sample A Male 13.8
Sample B Male 15.3
Sample C Female 15.2
Sample D Female 14.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75990507 Antisense, RP_060608_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.