MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.0 nTPM
HPA:30.0 nTPM
GTEx:54.2 nTPM
FANTOM5:10.3 Scaled Tags Per Million
Pig:7.8 nTPM
Mouse:59.7 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.7
2586 Male, age 75, left hemisphere 28.9
2219 Male, age 76, both hemispheres 27.9
1827 Male, age 72, unknown 26.6
1833 Male, age 53, unknown 23.2
2828 Female, age 72, unknown 22.5
1870 Female, age 42, unknown 22.0
2411 Female, age 72, unknown 21.7
1830 Male, age 51, unknown 20.6
2666 Male, age 74, left hemisphere 17.4
2019 Male, age 18, unknown 16.1
Dorsal raphe nucleus
nTPM: 28.1
2298 Female, age 72, unknown 32.2
2047 Male, age 72, unknown 29.7
2016 Female, age 72, unknown 29.4
1828 Male, age 53, unknown 27.2
2750 Male, age 76, both hemispheres 22.0
Inferior colliculus
nTPM: 23.5
2849 Male, age 72, unknown 25.3
1890 Male, age 53, unknown 24.7
2097 Female, age 72, unknown 23.8
1848 Female, age 42, unknown 20.2
Median raphe nucleus
nTPM: 21.1
2220 Male, age 76, midline 21.1
Pedunculopontine tegmental nucleus
nTPM: 23.5
2334 Male, age 80, both hemispheres 25.2
1921 Female, age 85, both hemispheres 23.6
2338 Male, age 61, both hemispheres 21.7
Periaquaductal grey, anterior
nTPM: 25.8
1795 Male, age 51, unknown 29.4
1947 Male, age 18, unknown 24.9
2502 Female, age 75, unknown 23.0
Periaquaductal grey, dorsal
nTPM: 29.4
2850 Male, age 76, both hemispheres 36.1
1840 Male, age 53, unknown 29.6
1831 Male, age 72, unknown 27.4
2464 Female, age 72, unknown 24.6
Periaquaductal grey, lateral
nTPM: 29.0
2272 Male, age 74, both hemispheres 33.6
2140 Male, age 76, both hemispheres 29.5
2053 Male, age 18, unknown 23.9
Pretectal area
nTPM: 21.8
2224 Female, age 72, unknown 34.0
2825 Male, age 18, unknown 29.0
2007 Male, age 72, unknown 23.9
2273 Male, age 74, both hemispheres 23.9
1816 Male, age 51, unknown 19.8
1815 Male, age 53, unknown 19.2
1944 Female, age 72, unknown 18.7
2316 Male, age 76, right hemisphere 18.5
2667 Female, age 75, unknown 18.4
2407 Male, age 75, both hemispheres 18.2
1817 Female, age 42, unknown 16.3
Red nucleus
nTPM: 18.6
2725 Female, age 75, unknown 23.1
2584 Male, age 75, left hemisphere 23.0
2588 Male, age 74, left hemisphere 20.5
2503 Female, age 72, unknown 18.7
2227 Male, age 72, unknown 18.2
2769 Male, age 72, unknown 18.2
1821 Female, age 72, unknown 18.1
2823 Male, age 76, right hemisphere 17.4
1954 Female, age 42, unknown 17.1
1865 Male, age 51, unknown 16.8
1904 Male, age 53, unknown 16.3
2785 Male, age 18, unknown 16.1
Substantia nigra
nTPM: 26.1
2699 Male, age 18, unknown 32.3
2590 Female, age 75, unknown 31.8
2583 Male, age 75, right hemisphere 29.8
2665 Male, age 74, both hemispheres 28.9
2241 Male, age 72, unknown 24.4
1916 Female, age 42, unknown 24.1
1889 Female, age 72, unknown 23.8
1851 Male, age 51, unknown 23.5
2409 Female, age 72, unknown 23.3
1941 Male, age 53, unknown 19.0
Superior colliculus
nTPM: 19.8
2261 Male, age 18, unknown 24.4
1796 Male, age 53, unknown 23.4
2664 Male, age 75, both hemispheres 23.4
1895 Male, age 76, right hemisphere 22.2
1839 Male, age 51, unknown 21.2
2587 Male, age 74, left hemisphere 18.4
2087 Female, age 72, unknown 17.5
2668 Female, age 75, unknown 16.6
1913 Female, age 42, unknown 15.9
1995 Male, age 72, unknown 15.2
Ventral tegmental area
nTPM: 30.0
2021 Male, age 53, unknown 39.7
1942 Male, age 51, unknown 31.9
1915 Female, age 42, unknown 31.4
2218 Male, age 76, both hemispheres 31.4
2410 Female, age 72, unknown 25.2
2223 Female, age 72, unknown 20.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.2
Samples: 139

Max nTPM: 194.0
Min nTPM: 5.7
Std nTPM: 31.9
Median nTPM: 49.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 194.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 183.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 144.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 142.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 124.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 120.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 118.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 115.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 100.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 98.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 94.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.3
FF:10158-103A5 76 years, female 10.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.8
Pig sample Sample description nTPM
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 16.5
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 5.1
Sample C Male 16.5
Sample D Male 6.1
Periaqueductal gray
nTPM: 5.6
Samples: 3

Max nTPM: 8.5
Min nTPM: 4.0
Sample B Female 4.0
Sample C Male 8.5
Sample D Male 4.3
Substantia nigra
nTPM: 3.4
Samples: 4

Max nTPM: 5.1
Min nTPM: 0.9
Sample A Female 5.1
Sample B Female 4.6
Sample C Male 3.1
Sample D Male 0.9
Superior colliculi
nTPM: 7.8
Samples: 4

Max nTPM: 12.6
Min nTPM: 1.8
Sample A Female 5.7
Sample B Female 1.8
Sample C Male 11.0
Sample D Male 12.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.7
Samples: 4

Max nTPM: 65.3
Min nTPM: 53.2
Sample A Male 56.9
Sample B Male 53.2
Sample C Female 63.4
Sample D Female 65.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
70430708 Antisense, RP_050614_01_H06, Mouse strain C57BL/6J (56 days, male) 4.0
72008305 Antisense, RP_050614_01_H06, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.