MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:265.4 nTPM
HPA:265.4 nTPM
GTEx:147.4 nTPM
FANTOM5:172.8 Scaled Tags Per Million
Pig:264.5 nTPM
Mouse:522.0 nTPM
Allen mouse:16.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 265.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 219.6
1827 Male, age 72, unknown 258.1
2219 Male, age 76, both hemispheres 253.2
2828 Female, age 72, unknown 251.7
1870 Female, age 42, unknown 220.9
2586 Male, age 75, left hemisphere 220.3
1833 Male, age 53, unknown 211.6
2411 Female, age 72, unknown 203.4
1830 Male, age 51, unknown 202.4
2666 Male, age 74, left hemisphere 189.5
2019 Male, age 18, unknown 185.3
Dorsal raphe nucleus
nTPM: 232.0
2298 Female, age 72, unknown 267.3
2047 Male, age 72, unknown 231.4
2016 Female, age 72, unknown 230.3
1828 Male, age 53, unknown 224.2
2750 Male, age 76, both hemispheres 206.7
Inferior colliculus
nTPM: 259.9
2097 Female, age 72, unknown 282.6
1848 Female, age 42, unknown 274.7
1890 Male, age 53, unknown 242.4
2849 Male, age 72, unknown 239.8
Median raphe nucleus
nTPM: 204.1
2220 Male, age 76, midline 204.1
Pedunculopontine tegmental nucleus
nTPM: 213.2
1921 Female, age 85, both hemispheres 260.8
2334 Male, age 80, both hemispheres 203.2
2338 Male, age 61, both hemispheres 175.4
Periaquaductal grey, anterior
nTPM: 265.4
1947 Male, age 18, unknown 292.0
1795 Male, age 51, unknown 255.9
2502 Female, age 75, unknown 248.2
Periaquaductal grey, dorsal
nTPM: 253.7
1840 Male, age 53, unknown 303.7
2464 Female, age 72, unknown 248.7
2850 Male, age 76, both hemispheres 242.5
1831 Male, age 72, unknown 220.0
Periaquaductal grey, lateral
nTPM: 242.9
2053 Male, age 18, unknown 273.6
2140 Male, age 76, both hemispheres 247.5
2272 Male, age 74, both hemispheres 207.7
Pretectal area
nTPM: 259.5
2273 Male, age 74, both hemispheres 300.6
2667 Female, age 75, unknown 284.7
1816 Male, age 51, unknown 281.4
2224 Female, age 72, unknown 275.0
2825 Male, age 18, unknown 264.2
1944 Female, age 72, unknown 258.7
1817 Female, age 42, unknown 247.5
2316 Male, age 76, right hemisphere 244.9
1815 Male, age 53, unknown 238.5
2407 Male, age 75, both hemispheres 235.7
2007 Male, age 72, unknown 223.6
Red nucleus
nTPM: 210.6
2503 Female, age 72, unknown 229.4
2725 Female, age 75, unknown 229.1
1821 Female, age 72, unknown 228.3
1954 Female, age 42, unknown 221.6
2769 Male, age 72, unknown 218.3
2227 Male, age 72, unknown 217.5
1904 Male, age 53, unknown 214.6
2823 Male, age 76, right hemisphere 213.3
1865 Male, age 51, unknown 204.9
2588 Male, age 74, left hemisphere 196.8
2785 Male, age 18, unknown 178.1
2584 Male, age 75, left hemisphere 175.5
Substantia nigra
nTPM: 222.6
2241 Male, age 72, unknown 243.0
1916 Female, age 42, unknown 242.0
1889 Female, age 72, unknown 241.4
2699 Male, age 18, unknown 233.9
1851 Male, age 51, unknown 229.1
2409 Female, age 72, unknown 225.4
2590 Female, age 75, unknown 209.6
2583 Male, age 75, right hemisphere 205.5
2665 Male, age 74, both hemispheres 204.0
1941 Male, age 53, unknown 192.6
Superior colliculus
nTPM: 244.7
1796 Male, age 53, unknown 279.2
2261 Male, age 18, unknown 270.5
2087 Female, age 72, unknown 264.0
2664 Male, age 75, both hemispheres 250.4
1839 Male, age 51, unknown 245.8
1895 Male, age 76, right hemisphere 241.8
1995 Male, age 72, unknown 236.4
2668 Female, age 75, unknown 226.2
2587 Male, age 74, left hemisphere 217.3
1913 Female, age 42, unknown 215.5
Ventral tegmental area
nTPM: 229.3
2223 Female, age 72, unknown 235.8
2021 Male, age 53, unknown 234.3
1915 Female, age 42, unknown 230.7
1942 Male, age 51, unknown 229.5
2410 Female, age 72, unknown 227.8
2218 Male, age 76, both hemispheres 217.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 147.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 147.4
Samples: 139

Max nTPM: 377.1
Min nTPM: 22.5
Std nTPM: 58.1
Median nTPM: 145.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 377.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 299.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 291.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 288.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 286.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 274.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 252.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 244.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 235.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 233.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 230.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.8
FF:10158-103A5 76 years, female 172.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 264.5
Pig sample Sample description nTPM
Midbrain
nTPM: 264.6
Samples: 4

Max nTPM: 342.1
Min nTPM: 220.4
Sample A Female 342.1
Sample B Female 233.2
Sample C Male 262.5
Sample D Male 220.4
Periaqueductal gray
nTPM: 236.1
Samples: 3

Max nTPM: 243.4
Min nTPM: 221.8
Sample B Female 243.4
Sample C Male 243.2
Sample D Male 221.8
Substantia nigra
nTPM: 197.4
Samples: 4

Max nTPM: 253.9
Min nTPM: 160.9
Sample A Female 253.9
Sample B Female 175.3
Sample C Male 199.3
Sample D Male 160.9
Superior colliculi
nTPM: 186.0
Samples: 4

Max nTPM: 211.4
Min nTPM: 125.1
Sample A Female 211.4
Sample B Female 125.1
Sample C Male 196.8
Sample D Male 210.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 522.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 522.0
Samples: 4

Max nTPM: 545.4
Min nTPM: 500.6
Sample A Male 500.6
Sample B Male 526.1
Sample C Female 545.4
Sample D Female 516.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.5
68080704 Antisense, RP_040929_01_G03, Mouse strain C57BL/6J (56 days, male) 16.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.