MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:273.4 nTPM
HPA:273.4 nTPM
GTEx:177.7 nTPM
FANTOM5:629.4 Scaled Tags Per Million
Pig:106.3 nTPM
Mouse:91.2 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 273.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 193.0
1830 Male, age 51, unknown 254.3
2019 Male, age 18, unknown 243.2
1833 Male, age 53, unknown 236.3
2411 Female, age 72, unknown 224.2
1870 Female, age 42, unknown 221.4
2666 Male, age 74, left hemisphere 174.1
2828 Female, age 72, unknown 164.3
1827 Male, age 72, unknown 141.6
2219 Male, age 76, both hemispheres 137.6
2586 Male, age 75, left hemisphere 133.0
Dorsal raphe nucleus
nTPM: 145.4
2750 Male, age 76, both hemispheres 246.1
2016 Female, age 72, unknown 148.2
1828 Male, age 53, unknown 139.9
2047 Male, age 72, unknown 100.5
2298 Female, age 72, unknown 92.1
Inferior colliculus
nTPM: 140.3
1890 Male, age 53, unknown 148.2
1848 Female, age 42, unknown 144.7
2849 Male, age 72, unknown 143.6
2097 Female, age 72, unknown 124.6
Median raphe nucleus
nTPM: 129.5
2220 Male, age 76, midline 129.5
Pedunculopontine tegmental nucleus
nTPM: 176.9
2334 Male, age 80, both hemispheres 190.6
2338 Male, age 61, both hemispheres 178.8
1921 Female, age 85, both hemispheres 161.3
Periaquaductal grey, anterior
nTPM: 123.1
2502 Female, age 75, unknown 142.8
1947 Male, age 18, unknown 128.9
1795 Male, age 51, unknown 97.8
Periaquaductal grey, dorsal
nTPM: 106.8
2464 Female, age 72, unknown 156.1
1831 Male, age 72, unknown 111.8
2850 Male, age 76, both hemispheres 82.6
1840 Male, age 53, unknown 76.8
Periaquaductal grey, lateral
nTPM: 112.9
2272 Male, age 74, both hemispheres 133.8
2053 Male, age 18, unknown 123.4
2140 Male, age 76, both hemispheres 81.6
Pretectal area
nTPM: 139.2
2316 Male, age 76, right hemisphere 203.4
1815 Male, age 53, unknown 190.4
1817 Female, age 42, unknown 170.6
2007 Male, age 72, unknown 158.7
2407 Male, age 75, both hemispheres 133.5
2825 Male, age 18, unknown 133.5
2273 Male, age 74, both hemispheres 115.4
1944 Female, age 72, unknown 109.7
2224 Female, age 72, unknown 109.2
2667 Female, age 75, unknown 104.5
1816 Male, age 51, unknown 102.8
Red nucleus
nTPM: 273.4
1821 Female, age 72, unknown 353.3
1865 Male, age 51, unknown 348.7
2823 Male, age 76, right hemisphere 318.6
1904 Male, age 53, unknown 312.8
2503 Female, age 72, unknown 279.8
1954 Female, age 42, unknown 271.5
2227 Male, age 72, unknown 254.7
2785 Male, age 18, unknown 253.5
2769 Male, age 72, unknown 250.1
2588 Male, age 74, left hemisphere 236.3
2725 Female, age 75, unknown 233.8
2584 Male, age 75, left hemisphere 167.6
Substantia nigra
nTPM: 164.1
2409 Female, age 72, unknown 228.9
1889 Female, age 72, unknown 184.1
1851 Male, age 51, unknown 179.2
2590 Female, age 75, unknown 177.6
2241 Male, age 72, unknown 170.7
2699 Male, age 18, unknown 163.0
2583 Male, age 75, right hemisphere 152.1
1941 Male, age 53, unknown 139.6
2665 Male, age 74, both hemispheres 126.3
1916 Female, age 42, unknown 119.7
Superior colliculus
nTPM: 174.5
1895 Male, age 76, right hemisphere 272.6
1995 Male, age 72, unknown 230.1
1913 Female, age 42, unknown 226.6
2668 Female, age 75, unknown 186.2
2587 Male, age 74, left hemisphere 183.8
1839 Male, age 51, unknown 183.5
1796 Male, age 53, unknown 131.6
2087 Female, age 72, unknown 114.7
2261 Male, age 18, unknown 110.9
2664 Male, age 75, both hemispheres 104.8
Ventral tegmental area
nTPM: 168.7
2223 Female, age 72, unknown 222.7
2410 Female, age 72, unknown 214.1
2218 Male, age 76, both hemispheres 148.3
1915 Female, age 42, unknown 147.8
2021 Male, age 53, unknown 146.7
1942 Male, age 51, unknown 132.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 177.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 177.7
Samples: 139

Max nTPM: 463.0
Min nTPM: 66.9
Std nTPM: 83.3
Median nTPM: 152.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 463.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 430.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 427.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 385.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 385.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 380.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 379.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 352.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 342.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 342.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 328.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 629.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 629.4
FF:10158-103A5 76 years, female 629.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 106.3
Pig sample Sample description nTPM
Midbrain
nTPM: 106.4
Samples: 4

Max nTPM: 223.1
Min nTPM: 55.8
Sample A Female 223.1
Sample B Female 89.0
Sample C Male 57.5
Sample D Male 55.8
Periaqueductal gray
nTPM: 59.4
Samples: 3

Max nTPM: 72.8
Min nTPM: 45.5
Sample B Female 72.8
Sample C Male 45.5
Sample D Male 59.8
Substantia nigra
nTPM: 84.2
Samples: 4

Max nTPM: 132.1
Min nTPM: 51.8
Sample A Female 87.5
Sample B Female 51.8
Sample C Male 65.5
Sample D Male 132.1
Superior colliculi
nTPM: 74.4
Samples: 4

Max nTPM: 93.7
Min nTPM: 38.2
Sample A Female 82.8
Sample B Female 38.2
Sample C Male 83.0
Sample D Male 93.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.2
Samples: 4

Max nTPM: 94.2
Min nTPM: 87.2
Sample A Male 87.2
Sample B Male 90.6
Sample C Female 92.8
Sample D Female 94.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
75146004 Antisense, RP_060220_02_B10, Mouse strain C57BL/6J (56 days, male) 6.4
564654 Antisense, RP_040826_01_B12, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.