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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:171.8 nTPM
HPA:171.8 nTPM
GTEx:255.3 nTPM
FANTOM5:435.5 Scaled Tags Per Million
Pig:145.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 171.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 148.7
2048 Male, age 55, midline 167.0
1981 Female, age 72, midline 159.1
2194 Female, age 79, both hemispheres 155.1
2816 Male, age 47, midline 146.8
2565 Male, age 75, midline 115.4
Cervical spinal cord, dorsal horn
nTPM: 171.8
2296 Male, age 66, both hemispheres 256.5
2173 Female, age 72, unknown 227.5
2069 Male, age 47, both hemispheres 164.1
1877 Male, age 55, unknown 146.2
2297 Male, age 75, both hemispheres 123.8
2721 Male, age 90, both hemispheres 112.5
Cervical spinal cord, ventral horn
nTPM: 167.4
2068 Male, age 55, unknown 184.4
2820 Female, age 79, both hemispheres 178.5
2480 Male, age 75, both hemispheres 167.4
2098 Female, age 72, unknown 161.3
2295 Male, age 66, both hemispheres 157.8
2809 Male, age 90, both hemispheres 155.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 255.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 255.3
Samples: 159

Max nTPM: 584.5
Min nTPM: 75.1
Std nTPM: 81.8
Median nTPM: 249.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 584.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 472.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 446.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 441.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 421.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 413.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 409.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 405.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 403.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 395.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 388.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 386.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 383.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 367.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 357.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 355.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 350.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 344.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 344.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 344.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 343.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 343.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 341.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 336.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 335.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 329.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 329.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 328.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 327.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 327.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 322.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 316.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 314.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 312.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 312.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 306.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 306.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 304.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 301.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 300.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 300.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 297.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 297.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 295.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 294.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 291.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 289.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 289.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 288.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 286.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 286.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 286.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 284.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 280.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 279.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 275.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 274.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 272.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 270.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 269.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 268.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 268.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 267.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 264.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 264.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 264.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 263.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 263.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 261.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 260.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 260.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 260.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 258.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 258.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 256.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 254.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 254.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 252.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 252.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 249.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 249.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 247.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 246.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 244.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 243.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 242.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 242.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 241.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 241.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 241.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 240.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 239.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 237.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 236.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 234.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 232.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 231.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 228.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 228.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 228.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 228.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 226.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 226.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 226.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 226.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 225.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 223.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 223.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 221.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 219.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 218.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 216.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 216.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 216.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 215.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 213.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 212.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 210.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 207.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 206.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 201.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 198.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 197.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 196.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 195.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 192.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 191.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 189.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 186.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 180.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 179.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 176.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 174.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 172.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 172.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 172.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 165.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 162.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 162.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 162.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 155.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 154.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 153.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 152.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 149.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 148.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 139.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 138.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 138.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 138.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 134.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 118.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 115.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 112.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 106.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 105.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 94.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 91.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 75.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 435.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 435.5
FF:10181-103D1 60 years, female 473.7
FF:10159-103A6 76 years, female 397.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 145.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 122.7
Samples: 4

Max nTPM: 142.7
Min nTPM: 93.9
Sample A Female 127.2
Sample B Female 126.8
Sample C Male 93.9
Sample D Male 142.7
Ventral spinal cord
nTPM: 145.6
Samples: 4

Max nTPM: 191.3
Min nTPM: 107.6
Sample A Female 145.6
Sample B Female 137.7
Sample C Male 107.6
Sample D Male 191.3

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