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FAM177A1
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  • FAM177A1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:45.0 nTPM
HPA:45.0 nTPM
GTEx:84.4 nTPM
FANTOM5:141.7 Scaled Tags Per Million
Pig:27.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 45.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 39.5
2048 Male, age 55, midline 42.4
2194 Female, age 79, both hemispheres 42.0
1981 Female, age 72, midline 39.7
2816 Male, age 47, midline 37.5
2565 Male, age 75, midline 35.8
Cervical spinal cord, dorsal horn
nTPM: 38.1
2173 Female, age 72, unknown 47.9
2296 Male, age 66, both hemispheres 41.6
1877 Male, age 55, unknown 37.0
2069 Male, age 47, both hemispheres 36.5
2721 Male, age 90, both hemispheres 32.9
2297 Male, age 75, both hemispheres 32.8
Cervical spinal cord, ventral horn
nTPM: 45.0
2480 Male, age 75, both hemispheres 50.9
2809 Male, age 90, both hemispheres 46.7
2068 Male, age 55, unknown 44.9
2295 Male, age 66, both hemispheres 44.2
2820 Female, age 79, both hemispheres 44.1
2098 Female, age 72, unknown 39.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 84.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 84.4
Samples: 159

Max nTPM: 138.3
Min nTPM: 38.1
Std nTPM: 20.4
Median nTPM: 82.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 138.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 133.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 128.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 127.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 126.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 125.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 125.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 123.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 122.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 120.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 120.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 120.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 118.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 117.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 115.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 114.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 114.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 113.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 111.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 110.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 108.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 108.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 107.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 107.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 104.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 104.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 104.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 103.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 101.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 101.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 100.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 100.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 99.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 99.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 99.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 98.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 98.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 97.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 97.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 97.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 96.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 95.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 95.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 95.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 94.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 93.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 93.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 92.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 91.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 91.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 91.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 90.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 90.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 90.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 90.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 90.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 90.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 90.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 90.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 89.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 89.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 89.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 88.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 88.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 88.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 88.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 88.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 88.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 87.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 86.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 86.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 86.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 85.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 85.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 84.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 84.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 84.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 83.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 82.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 82.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 82.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 81.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 81.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 81.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 81.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 79.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 79.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 79.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 78.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 78.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 78.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 78.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 78.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 78.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 78.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 77.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 77.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 77.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 77.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 77.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 77.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 76.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 76.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 76.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 75.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 75.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 75.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 74.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 74.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 73.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 73.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 73.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 73.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 73.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 72.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 72.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 72.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 71.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 71.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 71.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 70.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 69.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 69.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 69.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 68.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 67.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 67.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 67.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 67.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 66.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 65.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 64.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 64.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 63.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 63.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 62.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 62.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 61.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 61.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 60.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 60.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 60.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 59.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 59.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 57.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 56.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 55.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 55.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 55.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 54.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 53.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 52.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 48.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 48.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 48.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 47.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 43.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 42.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 38.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 141.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 141.7
FF:10181-103D1 60 years, female 183.3
FF:10159-103A6 76 years, female 100.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 27.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 24.5
Samples: 4

Max nTPM: 26.7
Min nTPM: 20.4
Sample A Female 26.7
Sample B Female 25.7
Sample C Male 20.4
Sample D Male 25.2
Ventral spinal cord
nTPM: 27.3
Samples: 4

Max nTPM: 30.2
Min nTPM: 25.4
Sample A Female 27.2
Sample B Female 25.4
Sample C Male 26.4
Sample D Male 30.2

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