MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.5 nTPM
HPA:17.5 nTPM
GTEx:13.3 nTPM
FANTOM5:19.2 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:15.1 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.0
1870 Female, age 42, unknown 16.9
1830 Male, age 51, unknown 16.3
1827 Male, age 72, unknown 15.8
2411 Female, age 72, unknown 15.3
2019 Male, age 18, unknown 15.2
1833 Male, age 53, unknown 15.0
2828 Female, age 72, unknown 14.9
2219 Male, age 76, both hemispheres 14.5
2666 Male, age 74, left hemisphere 13.5
2586 Male, age 75, left hemisphere 12.2
Dorsal raphe nucleus
nTPM: 15.3
2298 Female, age 72, unknown 16.1
2750 Male, age 76, both hemispheres 15.7
2016 Female, age 72, unknown 15.2
1828 Male, age 53, unknown 15.1
2047 Male, age 72, unknown 14.4
Inferior colliculus
nTPM: 17.5
1890 Male, age 53, unknown 18.6
2097 Female, age 72, unknown 18.0
1848 Female, age 42, unknown 17.0
2849 Male, age 72, unknown 16.3
Median raphe nucleus
nTPM: 15.8
2220 Male, age 76, midline 15.8
Pedunculopontine tegmental nucleus
nTPM: 15.3
1921 Female, age 85, both hemispheres 16.4
2334 Male, age 80, both hemispheres 15.4
2338 Male, age 61, both hemispheres 14.1
Periaquaductal grey, anterior
nTPM: 15.8
1947 Male, age 18, unknown 17.1
1795 Male, age 51, unknown 15.2
2502 Female, age 75, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 16.1
1840 Male, age 53, unknown 16.5
2850 Male, age 76, both hemispheres 16.5
2464 Female, age 72, unknown 16.0
1831 Male, age 72, unknown 15.2
Periaquaductal grey, lateral
nTPM: 15.9
2053 Male, age 18, unknown 16.4
2272 Male, age 74, both hemispheres 15.7
2140 Male, age 76, both hemispheres 15.5
Pretectal area
nTPM: 15.9
2224 Female, age 72, unknown 17.1
1944 Female, age 72, unknown 16.2
2273 Male, age 74, both hemispheres 16.2
1817 Female, age 42, unknown 16.1
2667 Female, age 75, unknown 16.1
2316 Male, age 76, right hemisphere 15.9
2825 Male, age 18, unknown 15.9
2007 Male, age 72, unknown 15.8
1816 Male, age 51, unknown 15.4
1815 Male, age 53, unknown 15.2
2407 Male, age 75, both hemispheres 14.6
Red nucleus
nTPM: 15.5
1954 Female, age 42, unknown 16.8
1821 Female, age 72, unknown 16.6
1865 Male, age 51, unknown 16.1
2503 Female, age 72, unknown 16.0
2769 Male, age 72, unknown 15.9
2823 Male, age 76, right hemisphere 15.8
2227 Male, age 72, unknown 15.5
1904 Male, age 53, unknown 15.0
2588 Male, age 74, left hemisphere 14.8
2725 Female, age 75, unknown 14.6
2785 Male, age 18, unknown 14.2
2584 Male, age 75, left hemisphere 14.1
Substantia nigra
nTPM: 15.1
2409 Female, age 72, unknown 17.2
2590 Female, age 75, unknown 17.1
1889 Female, age 72, unknown 15.9
2241 Male, age 72, unknown 15.8
2699 Male, age 18, unknown 14.7
1916 Female, age 42, unknown 14.3
1851 Male, age 51, unknown 14.2
1941 Male, age 53, unknown 14.2
2583 Male, age 75, right hemisphere 14.1
2665 Male, age 74, both hemispheres 13.9
Superior colliculus
nTPM: 15.4
2587 Male, age 74, left hemisphere 16.9
1913 Female, age 42, unknown 16.3
1895 Male, age 76, right hemisphere 16.1
1995 Male, age 72, unknown 16.0
1796 Male, age 53, unknown 15.8
1839 Male, age 51, unknown 15.7
2261 Male, age 18, unknown 14.9
2668 Female, age 75, unknown 14.7
2087 Female, age 72, unknown 14.6
2664 Male, age 75, both hemispheres 12.8
Ventral tegmental area
nTPM: 15.0
2410 Female, age 72, unknown 16.0
2021 Male, age 53, unknown 15.3
2223 Female, age 72, unknown 15.1
2218 Male, age 76, both hemispheres 14.9
1915 Female, age 42, unknown 14.4
1942 Male, age 51, unknown 14.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.3
Samples: 139

Max nTPM: 21.7
Min nTPM: 7.2
Std nTPM: 2.3
Median nTPM: 12.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 21.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 19.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 18.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 18.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 18.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 18.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 17.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 17.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 17.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 17.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.2
FF:10158-103A5 76 years, female 19.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.2
Pig sample Sample description nTPM
Midbrain
nTPM: 23.2
Samples: 4

Max nTPM: 25.2
Min nTPM: 20.6
Sample A Female 25.2
Sample B Female 20.6
Sample C Male 22.8
Sample D Male 24.2
Periaqueductal gray
nTPM: 20.2
Samples: 3

Max nTPM: 21.1
Min nTPM: 18.5
Sample B Female 18.5
Sample C Male 21.1
Sample D Male 21.0
Substantia nigra
nTPM: 20.7
Samples: 4

Max nTPM: 29.9
Min nTPM: 15.7
Sample A Female 29.9
Sample B Female 17.3
Sample C Male 19.7
Sample D Male 15.7
Superior colliculi
nTPM: 21.4
Samples: 4

Max nTPM: 26.0
Min nTPM: 16.0
Sample A Female 26.0
Sample B Female 16.0
Sample C Male 21.3
Sample D Male 22.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 16.4
Min nTPM: 14.2
Sample A Male 16.4
Sample B Male 14.9
Sample C Female 14.8
Sample D Female 14.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69080024 Antisense, RP_050324_01_E02, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.