MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:752.2 nTPM
HPA:752.2 nTPM
GTEx:727.8 nTPM
FANTOM5:1138.7 Scaled Tags Per Million
Pig:285.8 nTPM
Mouse:480.9 nTPM
Allen mouse:13.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 752.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 587.0
2411 Female, age 72, unknown 649.9
2019 Male, age 18, unknown 648.7
1833 Male, age 53, unknown 630.0
2666 Male, age 74, left hemisphere 622.5
1830 Male, age 51, unknown 617.1
1870 Female, age 42, unknown 606.8
2828 Female, age 72, unknown 581.0
2219 Male, age 76, both hemispheres 523.7
1827 Male, age 72, unknown 503.9
2586 Male, age 75, left hemisphere 486.5
Dorsal raphe nucleus
nTPM: 504.2
2750 Male, age 76, both hemispheres 622.8
1828 Male, age 53, unknown 511.1
2016 Female, age 72, unknown 497.4
2047 Male, age 72, unknown 457.1
2298 Female, age 72, unknown 432.7
Inferior colliculus
nTPM: 496.5
1890 Male, age 53, unknown 518.5
2097 Female, age 72, unknown 499.9
1848 Female, age 42, unknown 497.3
2849 Male, age 72, unknown 470.3
Median raphe nucleus
nTPM: 461.6
2220 Male, age 76, midline 461.6
Pedunculopontine tegmental nucleus
nTPM: 520.2
2334 Male, age 80, both hemispheres 581.9
1921 Female, age 85, both hemispheres 513.5
2338 Male, age 61, both hemispheres 465.0
Periaquaductal grey, anterior
nTPM: 477.0
2502 Female, age 75, unknown 506.7
1947 Male, age 18, unknown 498.0
1795 Male, age 51, unknown 426.3
Periaquaductal grey, dorsal
nTPM: 416.9
2464 Female, age 72, unknown 508.0
1831 Male, age 72, unknown 405.5
1840 Male, age 53, unknown 378.2
2850 Male, age 76, both hemispheres 375.8
Periaquaductal grey, lateral
nTPM: 412.7
2272 Male, age 74, both hemispheres 433.5
2053 Male, age 18, unknown 431.8
2140 Male, age 76, both hemispheres 372.7
Pretectal area
nTPM: 468.6
1815 Male, age 53, unknown 563.8
2316 Male, age 76, right hemisphere 553.4
1817 Female, age 42, unknown 547.0
2007 Male, age 72, unknown 524.0
2825 Male, age 18, unknown 462.9
2407 Male, age 75, both hemispheres 435.0
2224 Female, age 72, unknown 423.6
1816 Male, age 51, unknown 422.5
1944 Female, age 72, unknown 409.7
2273 Male, age 74, both hemispheres 408.9
2667 Female, age 75, unknown 403.9
Red nucleus
nTPM: 752.2
1821 Female, age 72, unknown 885.9
1904 Male, age 53, unknown 852.8
2503 Female, age 72, unknown 848.7
2823 Male, age 76, right hemisphere 798.8
1954 Female, age 42, unknown 792.8
1865 Male, age 51, unknown 789.9
2227 Male, age 72, unknown 742.7
2769 Male, age 72, unknown 740.4
2725 Female, age 75, unknown 698.7
2785 Male, age 18, unknown 689.6
2588 Male, age 74, left hemisphere 661.9
2584 Male, age 75, left hemisphere 523.6
Substantia nigra
nTPM: 547.4
2241 Male, age 72, unknown 609.1
1851 Male, age 51, unknown 606.7
2409 Female, age 72, unknown 604.1
1916 Female, age 42, unknown 570.5
2590 Female, age 75, unknown 556.8
1889 Female, age 72, unknown 554.1
2699 Male, age 18, unknown 525.5
1941 Male, age 53, unknown 495.7
2583 Male, age 75, right hemisphere 486.7
2665 Male, age 74, both hemispheres 464.6
Superior colliculus
nTPM: 510.5
1895 Male, age 76, right hemisphere 655.7
2587 Male, age 74, left hemisphere 567.4
2668 Female, age 75, unknown 563.3
1839 Male, age 51, unknown 533.3
1995 Male, age 72, unknown 524.6
1913 Female, age 42, unknown 485.8
1796 Male, age 53, unknown 481.3
2261 Male, age 18, unknown 440.8
2087 Female, age 72, unknown 435.8
2664 Male, age 75, both hemispheres 416.5
Ventral tegmental area
nTPM: 529.2
2410 Female, age 72, unknown 694.6
1915 Female, age 42, unknown 535.9
2218 Male, age 76, both hemispheres 512.1
1942 Male, age 51, unknown 502.1
2223 Female, age 72, unknown 499.0
2021 Male, age 53, unknown 431.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 727.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 727.8
Samples: 139

Max nTPM: 2877.8
Min nTPM: 189.1
Std nTPM: 340.1
Median nTPM: 665.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 2877.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 2010.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1475.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1359.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1311.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 1284.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1284.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 1239.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1221.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1213.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1213.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1138.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1138.7
FF:10158-103A5 76 years, female 1138.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 285.8
Pig sample Sample description nTPM
Midbrain
nTPM: 224.1
Samples: 4

Max nTPM: 305.6
Min nTPM: 141.7
Sample A Female 305.6
Sample B Female 277.5
Sample C Male 141.7
Sample D Male 171.4
Periaqueductal gray
nTPM: 210.7
Samples: 3

Max nTPM: 214.8
Min nTPM: 202.4
Sample B Female 214.8
Sample C Male 202.4
Sample D Male 214.8
Substantia nigra
nTPM: 285.8
Samples: 4

Max nTPM: 377.3
Min nTPM: 164.8
Sample A Female 377.3
Sample B Female 164.8
Sample C Male 248.9
Sample D Male 352.3
Superior colliculi
nTPM: 209.0
Samples: 4

Max nTPM: 281.7
Min nTPM: 99.1
Sample A Female 281.7
Sample B Female 99.1
Sample C Male 204.7
Sample D Male 250.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 480.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 480.9
Samples: 4

Max nTPM: 561.3
Min nTPM: 404.0
Sample A Male 561.3
Sample B Male 470.7
Sample C Female 404.0
Sample D Female 487.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.4
75042261 Antisense, RP_060412_02_D03, Mouse strain C57BL/6J (56 days, male) 15.3
631703 Antisense, RP_040907_01_A03, Mouse strain C57BL/6J (56 days, male) 11.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.