We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
QDPR
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • QDPR
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:524.9 nTPM
HPA:524.9 nTPM
GTEx:673.1 nTPM
FANTOM5:355.9 Scaled Tags Per Million
Pig:202.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 524.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 473.3
1981 Female, age 72, midline 513.4
2194 Female, age 79, both hemispheres 499.2
2048 Male, age 55, midline 471.8
2565 Male, age 75, midline 454.6
2816 Male, age 47, midline 427.6
Cervical spinal cord, dorsal horn
nTPM: 466.9
2173 Female, age 72, unknown 577.3
2069 Male, age 47, both hemispheres 485.6
2296 Male, age 66, both hemispheres 468.2
1877 Male, age 55, unknown 458.3
2297 Male, age 75, both hemispheres 431.6
2721 Male, age 90, both hemispheres 380.0
Cervical spinal cord, ventral horn
nTPM: 524.9
2480 Male, age 75, both hemispheres 620.8
2068 Male, age 55, unknown 563.5
2809 Male, age 90, both hemispheres 531.8
2820 Female, age 79, both hemispheres 531.8
2295 Male, age 66, both hemispheres 469.6
2098 Female, age 72, unknown 431.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 673.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 673.1
Samples: 159

Max nTPM: 2016.2
Min nTPM: 205.7
Std nTPM: 261.1
Median nTPM: 642.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2016.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1264.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1153.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1124.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1107.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1103.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1099.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1088.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1086.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1067.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1063.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1062.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1049.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1041.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1036.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1034.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1011.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1004.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 995.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 986.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 977.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 974.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 964.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 958.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 951.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 940.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 936.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 935.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 922.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 917.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 914.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 913.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 899.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 895.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 894.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 889.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 879.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 862.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 862.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 854.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 853.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 847.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 842.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 830.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 822.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 820.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 819.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 813.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 799.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 798.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 788.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 772.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 769.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 761.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 759.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 741.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 730.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 729.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 728.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 728.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 722.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 717.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 709.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 707.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 705.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 699.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 695.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 692.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 689.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 689.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 687.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 676.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 670.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 669.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 667.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 660.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 652.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 649.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 644.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 642.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 640.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 638.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 634.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 631.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 630.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 630.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 622.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 614.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 613.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 605.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 602.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 593.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 591.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 586.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 585.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 584.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 579.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 572.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 571.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 567.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 562.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 561.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 557.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 553.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 551.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 542.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 538.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 529.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 526.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 514.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 508.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 493.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 490.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 486.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 483.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 481.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 477.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 477.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 470.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 469.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 468.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 464.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 460.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 460.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 458.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 455.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 449.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 444.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 441.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 436.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 435.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 428.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 420.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 407.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 403.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 399.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 397.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 388.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 387.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 387.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 387.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 379.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 379.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 374.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 367.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 364.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 360.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 339.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 339.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 329.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 308.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 300.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 277.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 248.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 247.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 243.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 231.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 218.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 205.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 355.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 355.9
FF:10181-103D1 60 years, female 381.9
FF:10159-103A6 76 years, female 330.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 202.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 181.7
Samples: 4

Max nTPM: 208.2
Min nTPM: 153.8
Sample A Female 207.0
Sample B Female 157.8
Sample C Male 153.8
Sample D Male 208.2
Ventral spinal cord
nTPM: 202.3
Samples: 4

Max nTPM: 221.6
Min nTPM: 190.3
Sample A Female 197.1
Sample B Female 190.3
Sample C Male 200.0
Sample D Male 221.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.