MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.7 nTPM
HPA:13.7 nTPM
GTEx:13.3 nTPM
FANTOM5:22.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.0
1827 Male, age 72, unknown 18.5
2828 Female, age 72, unknown 13.5
2019 Male, age 18, unknown 11.7
2411 Female, age 72, unknown 11.3
2666 Male, age 74, left hemisphere 8.5
2219 Male, age 76, both hemispheres 8.1
1830 Male, age 51, unknown 8.0
1870 Female, age 42, unknown 6.9
2586 Male, age 75, left hemisphere 6.7
1833 Male, age 53, unknown 6.5
Dorsal raphe nucleus
nTPM: 8.9
2298 Female, age 72, unknown 14.7
2750 Male, age 76, both hemispheres 10.6
2016 Female, age 72, unknown 6.9
1828 Male, age 53, unknown 6.3
2047 Male, age 72, unknown 6.1
Inferior colliculus
nTPM: 9.6
1848 Female, age 42, unknown 11.5
2849 Male, age 72, unknown 9.9
2097 Female, age 72, unknown 9.2
1890 Male, age 53, unknown 8.0
Median raphe nucleus
nTPM: 10.3
2220 Male, age 76, midline 10.3
Pedunculopontine tegmental nucleus
nTPM: 12.5
2334 Male, age 80, both hemispheres 14.0
1921 Female, age 85, both hemispheres 13.9
2338 Male, age 61, both hemispheres 9.5
Periaquaductal grey, anterior
nTPM: 11.0
1795 Male, age 51, unknown 13.1
1947 Male, age 18, unknown 10.4
2502 Female, age 75, unknown 9.6
Periaquaductal grey, dorsal
nTPM: 10.5
1840 Male, age 53, unknown 12.6
2464 Female, age 72, unknown 10.0
2850 Male, age 76, both hemispheres 9.7
1831 Male, age 72, unknown 9.6
Periaquaductal grey, lateral
nTPM: 10.4
2140 Male, age 76, both hemispheres 12.0
2053 Male, age 18, unknown 10.3
2272 Male, age 74, both hemispheres 8.8
Pretectal area
nTPM: 13.7
1816 Male, age 51, unknown 24.5
2007 Male, age 72, unknown 20.3
1817 Female, age 42, unknown 19.2
1815 Male, age 53, unknown 18.8
1944 Female, age 72, unknown 13.9
2316 Male, age 76, right hemisphere 11.1
2224 Female, age 72, unknown 10.3
2273 Male, age 74, both hemispheres 9.5
2667 Female, age 75, unknown 8.7
2825 Male, age 18, unknown 8.4
2407 Male, age 75, both hemispheres 6.7
Red nucleus
nTPM: 7.4
2785 Male, age 18, unknown 11.6
2725 Female, age 75, unknown 9.0
2588 Male, age 74, left hemisphere 8.4
1821 Female, age 72, unknown 7.7
2503 Female, age 72, unknown 7.2
2823 Male, age 76, right hemisphere 7.2
2227 Male, age 72, unknown 7.0
2769 Male, age 72, unknown 6.6
1954 Female, age 42, unknown 6.4
1904 Male, age 53, unknown 6.1
2584 Male, age 75, left hemisphere 5.9
1865 Male, age 51, unknown 5.8
Substantia nigra
nTPM: 8.8
1889 Female, age 72, unknown 16.5
2590 Female, age 75, unknown 9.9
1941 Male, age 53, unknown 8.7
2583 Male, age 75, right hemisphere 8.5
1916 Female, age 42, unknown 8.3
2665 Male, age 74, both hemispheres 8.1
2409 Female, age 72, unknown 8.0
1851 Male, age 51, unknown 7.3
2241 Male, age 72, unknown 7.2
2699 Male, age 18, unknown 5.0
Superior colliculus
nTPM: 11.7
1796 Male, age 53, unknown 17.9
1895 Male, age 76, right hemisphere 17.2
2261 Male, age 18, unknown 16.2
2087 Female, age 72, unknown 14.7
2668 Female, age 75, unknown 10.6
1839 Male, age 51, unknown 9.2
1913 Female, age 42, unknown 8.9
2587 Male, age 74, left hemisphere 7.9
1995 Male, age 72, unknown 7.4
2664 Male, age 75, both hemispheres 6.7
Ventral tegmental area
nTPM: 8.2
2410 Female, age 72, unknown 9.7
1915 Female, age 42, unknown 9.5
2218 Male, age 76, both hemispheres 8.4
2021 Male, age 53, unknown 8.2
1942 Male, age 51, unknown 7.7
2223 Female, age 72, unknown 5.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.3
Samples: 139

Max nTPM: 65.1
Min nTPM: 1.4
Std nTPM: 9.9
Median nTPM: 11.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 65.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 60.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 45.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 39.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 35.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 31.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 31.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 30.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 30.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 28.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.9
FF:10158-103A5 76 years, female 22.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.