MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA:28.5 nTPM
GTEx:8.9 nTPM
FANTOM5:4.8 Scaled Tags Per Million
Pig:27.2 nTPM
Mouse:37.2 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.2
2219 Male, age 76, both hemispheres 19.5
2411 Female, age 72, unknown 7.7
1833 Male, age 53, unknown 7.2
1827 Male, age 72, unknown 5.1
1830 Male, age 51, unknown 4.3
2586 Male, age 75, left hemisphere 4.3
2828 Female, age 72, unknown 3.9
2666 Male, age 74, left hemisphere 3.4
2019 Male, age 18, unknown 3.3
1870 Female, age 42, unknown 2.8
Dorsal raphe nucleus
nTPM: 6.9
1828 Male, age 53, unknown 10.2
2047 Male, age 72, unknown 8.3
2298 Female, age 72, unknown 6.5
2016 Female, age 72, unknown 5.5
2750 Male, age 76, both hemispheres 3.8
Inferior colliculus
nTPM: 6.7
1890 Male, age 53, unknown 9.9
2097 Female, age 72, unknown 6.7
2849 Male, age 72, unknown 5.4
1848 Female, age 42, unknown 4.9
Median raphe nucleus
nTPM: 8.9
2220 Male, age 76, midline 8.9
Pedunculopontine tegmental nucleus
nTPM: 4.7
1921 Female, age 85, both hemispheres 8.8
2334 Male, age 80, both hemispheres 2.7
2338 Male, age 61, both hemispheres 2.7
Periaquaductal grey, anterior
nTPM: 5.4
2502 Female, age 75, unknown 13.0
1795 Male, age 51, unknown 1.7
1947 Male, age 18, unknown 1.4
Periaquaductal grey, dorsal
nTPM: 6.1
1840 Male, age 53, unknown 9.6
1831 Male, age 72, unknown 5.8
2464 Female, age 72, unknown 4.6
2850 Male, age 76, both hemispheres 4.2
Periaquaductal grey, lateral
nTPM: 2.7
2140 Male, age 76, both hemispheres 3.1
2053 Male, age 18, unknown 2.6
2272 Male, age 74, both hemispheres 2.5
Pretectal area
nTPM: 4.1
1944 Female, age 72, unknown 9.4
1816 Male, age 51, unknown 6.1
2224 Female, age 72, unknown 5.9
2667 Female, age 75, unknown 5.9
1817 Female, age 42, unknown 3.4
2825 Male, age 18, unknown 3.4
1815 Male, age 53, unknown 3.0
2316 Male, age 76, right hemisphere 2.6
2007 Male, age 72, unknown 2.3
2273 Male, age 74, both hemispheres 2.0
2407 Male, age 75, both hemispheres 1.6
Red nucleus
nTPM: 2.0
2584 Male, age 75, left hemisphere 4.1
2785 Male, age 18, unknown 2.7
2588 Male, age 74, left hemisphere 2.4
1821 Female, age 72, unknown 2.3
2725 Female, age 75, unknown 2.3
1904 Male, age 53, unknown 2.1
2503 Female, age 72, unknown 2.0
1954 Female, age 42, unknown 1.5
2227 Male, age 72, unknown 1.5
2769 Male, age 72, unknown 1.4
2823 Male, age 76, right hemisphere 1.3
1865 Male, age 51, unknown 0.9
Substantia nigra
nTPM: 28.5
1916 Female, age 42, unknown 70.9
2241 Male, age 72, unknown 49.1
2699 Male, age 18, unknown 46.9
1851 Male, age 51, unknown 40.6
2409 Female, age 72, unknown 27.1
2665 Male, age 74, both hemispheres 16.9
1889 Female, age 72, unknown 11.9
1941 Male, age 53, unknown 11.7
2583 Male, age 75, right hemisphere 5.7
2590 Female, age 75, unknown 4.0
Superior colliculus
nTPM: 4.0
2087 Female, age 72, unknown 11.0
1895 Male, age 76, right hemisphere 5.3
1796 Male, age 53, unknown 4.4
2261 Male, age 18, unknown 3.8
2668 Female, age 75, unknown 3.1
1913 Female, age 42, unknown 2.8
1995 Male, age 72, unknown 2.7
1839 Male, age 51, unknown 2.6
2587 Male, age 74, left hemisphere 2.1
2664 Male, age 75, both hemispheres 2.1
Ventral tegmental area
nTPM: 16.2
1915 Female, age 42, unknown 28.5
2410 Female, age 72, unknown 24.2
1942 Male, age 51, unknown 17.4
2218 Male, age 76, both hemispheres 14.6
2223 Female, age 72, unknown 8.1
2021 Male, age 53, unknown 4.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.9
Samples: 139

Max nTPM: 41.1
Min nTPM: 0.6
Std nTPM: 7.6
Median nTPM: 6.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 41.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 38.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 28.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 28.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 25.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 25.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 23.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 23.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 23.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 21.9
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 21.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.8
FF:10158-103A5 76 years, female 4.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.2
Pig sample Sample description nTPM
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 12.8
Min nTPM: 3.0
Sample A Female 3.4
Sample B Female 11.8
Sample C Male 3.0
Sample D Male 12.8
Periaqueductal gray
nTPM: 9.4
Samples: 3

Max nTPM: 15.5
Min nTPM: 4.9
Sample B Female 7.7
Sample C Male 15.5
Sample D Male 4.9
Substantia nigra
nTPM: 27.2
Samples: 4

Max nTPM: 44.3
Min nTPM: 10.1
Sample A Female 32.7
Sample B Female 21.6
Sample C Male 44.3
Sample D Male 10.1
Superior colliculi
nTPM: 5.5
Samples: 4

Max nTPM: 8.6
Min nTPM: 1.5
Sample A Female 8.6
Sample B Female 1.5
Sample C Male 3.1
Sample D Male 8.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.2
Samples: 4

Max nTPM: 39.6
Min nTPM: 33.2
Sample A Male 33.2
Sample B Male 37.3
Sample C Female 39.6
Sample D Female 38.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
71064217 Antisense, RP_050725_03_D06, Mouse strain C57BL/6J (56 days, male) 4.7
68797966 Antisense, RP_050215_01_E04, Mouse strain C57BL/6J (56 days, male) 3.8

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.