MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.2 nTPM
HPA:9.2 nTPM
GTEx:7.1 nTPM
FANTOM5:3.1 Scaled Tags Per Million
Mouse:249.7 nTPM
Allen mouse:13.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.2
2219 Male, age 76, both hemispheres 9.2
1827 Male, age 72, unknown 8.9
2411 Female, age 72, unknown 7.8
2019 Male, age 18, unknown 7.5
2586 Male, age 75, left hemisphere 6.8
2666 Male, age 74, left hemisphere 6.8
1870 Female, age 42, unknown 6.3
2828 Female, age 72, unknown 6.3
1833 Male, age 53, unknown 6.1
1830 Male, age 51, unknown 6.0
Dorsal raphe nucleus
nTPM: 8.7
2298 Female, age 72, unknown 13.6
2750 Male, age 76, both hemispheres 10.1
2047 Male, age 72, unknown 7.2
1828 Male, age 53, unknown 6.6
2016 Female, age 72, unknown 6.1
Inferior colliculus
nTPM: 6.4
2097 Female, age 72, unknown 7.0
1890 Male, age 53, unknown 6.7
2849 Male, age 72, unknown 6.2
1848 Female, age 42, unknown 5.6
Median raphe nucleus
nTPM: 9.1
2220 Male, age 76, midline 9.1
Pedunculopontine tegmental nucleus
nTPM: 9.2
2334 Male, age 80, both hemispheres 10.5
1921 Female, age 85, both hemispheres 10.2
2338 Male, age 61, both hemispheres 6.8
Periaquaductal grey, anterior
nTPM: 7.3
1947 Male, age 18, unknown 7.8
2502 Female, age 75, unknown 7.2
1795 Male, age 51, unknown 6.9
Periaquaductal grey, dorsal
nTPM: 7.2
1840 Male, age 53, unknown 7.8
1831 Male, age 72, unknown 7.2
2850 Male, age 76, both hemispheres 7.2
2464 Female, age 72, unknown 6.4
Periaquaductal grey, lateral
nTPM: 7.4
2053 Male, age 18, unknown 7.4
2272 Male, age 74, both hemispheres 7.4
2140 Male, age 76, both hemispheres 7.3
Pretectal area
nTPM: 8.0
2224 Female, age 72, unknown 9.6
2007 Male, age 72, unknown 9.4
1816 Male, age 51, unknown 9.2
2825 Male, age 18, unknown 9.0
2273 Male, age 74, both hemispheres 8.1
1944 Female, age 72, unknown 7.9
1817 Female, age 42, unknown 7.8
2407 Male, age 75, both hemispheres 7.5
2667 Female, age 75, unknown 7.3
1815 Male, age 53, unknown 7.2
2316 Male, age 76, right hemisphere 5.4
Red nucleus
nTPM: 8.0
1821 Female, age 72, unknown 14.6
1865 Male, age 51, unknown 9.7
1954 Female, age 42, unknown 9.6
2769 Male, age 72, unknown 8.3
2227 Male, age 72, unknown 8.0
2725 Female, age 75, unknown 7.5
2503 Female, age 72, unknown 7.1
2584 Male, age 75, left hemisphere 6.7
2785 Male, age 18, unknown 6.7
2588 Male, age 74, left hemisphere 6.5
1904 Male, age 53, unknown 6.4
2823 Male, age 76, right hemisphere 4.7
Substantia nigra
nTPM: 6.7
1941 Male, age 53, unknown 8.5
1916 Female, age 42, unknown 8.4
1889 Female, age 72, unknown 7.9
2665 Male, age 74, both hemispheres 6.8
2583 Male, age 75, right hemisphere 6.6
2590 Female, age 75, unknown 6.4
2409 Female, age 72, unknown 5.9
2241 Male, age 72, unknown 5.8
2699 Male, age 18, unknown 5.6
1851 Male, age 51, unknown 5.5
Superior colliculus
nTPM: 6.6
1796 Male, age 53, unknown 7.3
2668 Female, age 75, unknown 7.1
2587 Male, age 74, left hemisphere 7.0
2261 Male, age 18, unknown 6.9
2664 Male, age 75, both hemispheres 6.8
2087 Female, age 72, unknown 6.7
1839 Male, age 51, unknown 6.6
1895 Male, age 76, right hemisphere 6.6
1913 Female, age 42, unknown 5.8
1995 Male, age 72, unknown 5.3
Ventral tegmental area
nTPM: 7.4
1915 Female, age 42, unknown 8.4
1942 Male, age 51, unknown 7.9
2218 Male, age 76, both hemispheres 7.9
2021 Male, age 53, unknown 7.8
2410 Female, age 72, unknown 7.0
2223 Female, age 72, unknown 5.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.1
Samples: 139

Max nTPM: 74.0
Min nTPM: 0.8
Std nTPM: 8.0
Median nTPM: 5.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 74.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 35.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 35.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 29.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 23.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 23.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 23.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 22.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 16.6
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 12.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 12.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.1
FF:10158-103A5 76 years, female 3.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 249.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 249.7
Samples: 4

Max nTPM: 260.6
Min nTPM: 236.5
Sample A Male 236.5
Sample B Male 260.6
Sample C Female 254.2
Sample D Female 247.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.5
70429399 Antisense, RP_050614_01_F01, Mouse strain C57BL/6J (56 days, male) 13.5

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