MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.3 nTPM
HPA:50.3 nTPM
GTEx:33.7 nTPM
FANTOM5:141.9 Scaled Tags Per Million
Pig:49.7 nTPM
Mouse:11.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.6
2586 Male, age 75, left hemisphere 89.2
2828 Female, age 72, unknown 42.8
1830 Male, age 51, unknown 40.3
1833 Male, age 53, unknown 39.3
1870 Female, age 42, unknown 37.9
2666 Male, age 74, left hemisphere 33.6
2019 Male, age 18, unknown 32.9
2411 Female, age 72, unknown 31.8
1827 Male, age 72, unknown 30.2
2219 Male, age 76, both hemispheres 28.2
Dorsal raphe nucleus
nTPM: 43.9
2016 Female, age 72, unknown 52.5
2750 Male, age 76, both hemispheres 45.2
1828 Male, age 53, unknown 43.3
2298 Female, age 72, unknown 42.4
2047 Male, age 72, unknown 36.3
Inferior colliculus
nTPM: 34.1
2849 Male, age 72, unknown 36.2
1890 Male, age 53, unknown 36.1
2097 Female, age 72, unknown 32.4
1848 Female, age 42, unknown 31.7
Median raphe nucleus
nTPM: 48.3
2220 Male, age 76, midline 48.3
Pedunculopontine tegmental nucleus
nTPM: 37.1
2338 Male, age 61, both hemispheres 51.7
2334 Male, age 80, both hemispheres 33.3
1921 Female, age 85, both hemispheres 26.4
Periaquaductal grey, anterior
nTPM: 38.5
1795 Male, age 51, unknown 42.0
2502 Female, age 75, unknown 40.4
1947 Male, age 18, unknown 33.2
Periaquaductal grey, dorsal
nTPM: 50.1
2850 Male, age 76, both hemispheres 73.8
1831 Male, age 72, unknown 51.1
1840 Male, age 53, unknown 40.0
2464 Female, age 72, unknown 35.7
Periaquaductal grey, lateral
nTPM: 50.3
2140 Male, age 76, both hemispheres 63.5
2272 Male, age 74, both hemispheres 46.9
2053 Male, age 18, unknown 40.4
Pretectal area
nTPM: 36.4
2316 Male, age 76, right hemisphere 45.4
2224 Female, age 72, unknown 44.1
2273 Male, age 74, both hemispheres 43.6
2667 Female, age 75, unknown 37.0
2407 Male, age 75, both hemispheres 36.8
1815 Male, age 53, unknown 36.1
2825 Male, age 18, unknown 35.4
1817 Female, age 42, unknown 32.3
1944 Female, age 72, unknown 31.2
2007 Male, age 72, unknown 29.8
1816 Male, age 51, unknown 28.3
Red nucleus
nTPM: 40.3
2584 Male, age 75, left hemisphere 49.1
2227 Male, age 72, unknown 47.5
2769 Male, age 72, unknown 46.9
1904 Male, age 53, unknown 43.0
2823 Male, age 76, right hemisphere 42.8
1865 Male, age 51, unknown 41.1
2785 Male, age 18, unknown 40.8
2725 Female, age 75, unknown 39.5
2503 Female, age 72, unknown 38.5
1954 Female, age 42, unknown 37.9
1821 Female, age 72, unknown 30.6
2588 Male, age 74, left hemisphere 25.7
Substantia nigra
nTPM: 43.2
2699 Male, age 18, unknown 75.9
2590 Female, age 75, unknown 50.2
2665 Male, age 74, both hemispheres 49.2
2583 Male, age 75, right hemisphere 48.3
1851 Male, age 51, unknown 43.0
1916 Female, age 42, unknown 39.9
1941 Male, age 53, unknown 34.9
2241 Male, age 72, unknown 33.2
1889 Female, age 72, unknown 29.6
2409 Female, age 72, unknown 28.1
Superior colliculus
nTPM: 39.0
1913 Female, age 42, unknown 56.5
1995 Male, age 72, unknown 54.7
2664 Male, age 75, both hemispheres 45.6
1796 Male, age 53, unknown 38.4
2587 Male, age 74, left hemisphere 36.8
1839 Male, age 51, unknown 36.5
2261 Male, age 18, unknown 33.6
2087 Female, age 72, unknown 32.8
2668 Female, age 75, unknown 29.0
1895 Male, age 76, right hemisphere 26.8
Ventral tegmental area
nTPM: 42.4
2021 Male, age 53, unknown 49.8
2218 Male, age 76, both hemispheres 49.7
1942 Male, age 51, unknown 44.4
1915 Female, age 42, unknown 42.7
2223 Female, age 72, unknown 35.6
2410 Female, age 72, unknown 32.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.7
Samples: 139

Max nTPM: 181.0
Min nTPM: 3.6
Std nTPM: 22.1
Median nTPM: 29.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 181.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 170.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 114.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 90.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 78.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 61.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 60.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 58.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 53.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 51.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 50.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 141.9
FF:10158-103A5 76 years, female 141.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.7
Pig sample Sample description nTPM
Midbrain
nTPM: 37.2
Samples: 4

Max nTPM: 59.5
Min nTPM: 23.2
Sample A Female 59.5
Sample B Female 33.1
Sample C Male 32.9
Sample D Male 23.2
Periaqueductal gray
nTPM: 36.2
Samples: 3

Max nTPM: 39.3
Min nTPM: 32.0
Sample B Female 37.2
Sample C Male 39.3
Sample D Male 32.0
Substantia nigra
nTPM: 49.7
Samples: 4

Max nTPM: 72.8
Min nTPM: 32.5
Sample A Female 45.5
Sample B Female 72.8
Sample C Male 32.5
Sample D Male 48.1
Superior colliculi
nTPM: 42.7
Samples: 4

Max nTPM: 60.5
Min nTPM: 27.1
Sample A Female 51.2
Sample B Female 60.5
Sample C Male 27.1
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.4
Samples: 4

Max nTPM: 13.5
Min nTPM: 8.8
Sample A Male 13.5
Sample B Male 10.5
Sample C Female 12.7
Sample D Female 8.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70812948 Antisense, RP_050712_02_H03, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.