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SPARCL1
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:1322.8 nTPM
FANTOM5:2348.5 Scaled Tags Per Million
Pig:749.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody CAB026225
Glial cells High
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1322.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1322.8
Samples: 246

Max nTPM: 3122.5
Min nTPM: 175.0
Std nTPM: 532.4
Median nTPM: 1255.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3122.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 3013.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2965.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2838.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 2495.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 2480.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2466.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2458.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2420.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 2399.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2368.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 2297.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2293.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 2241.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2229.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2217.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 2202.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2179.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 2148.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 2126.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 2112.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2056.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 2036.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 2033.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1989.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1988.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1985.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1983.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1982.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1978.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1950.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1929.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1909.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1902.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1884.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1879.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1864.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1846.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1839.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1838.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1834.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1833.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1829.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1819.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1819.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1813.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1808.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1795.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1769.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1744.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1737.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1737.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1721.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1714.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1713.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1707.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1706.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1684.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1668.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1660.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1653.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1648.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1647.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1633.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1610.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1609.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1587.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1581.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1575.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1573.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1572.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1567.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1563.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1562.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1546.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1544.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1536.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1526.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1525.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1523.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1516.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1508.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1506.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1498.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1497.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1494.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1491.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1470.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1466.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1462.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1452.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1447.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1446.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1439.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1434.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1430.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1425.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1424.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1419.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1396.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1385.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1383.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1382.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1381.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1379.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1375.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1373.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1372.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1370.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1369.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1360.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1352.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1348.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1345.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1330.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1323.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1296.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1286.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1279.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1276.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1273.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1261.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1260.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1249.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1239.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1234.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1232.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1229.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1220.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1208.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1207.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1205.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1199.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1198.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1191.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1187.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1164.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1147.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1146.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1146.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1144.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1141.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1137.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1128.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1122.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1108.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1107.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1100.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1096.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1094.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1084.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1081.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1079.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1077.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1075.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1075.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1072.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1066.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1050.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1043.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1041.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1041.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1040.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1028.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1028.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1025.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1015.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1012.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1009.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1008.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1001.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1000.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 998.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 997.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 994.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 976.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 976.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 969.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 965.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 964.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 961.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 959.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 954.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 950.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 942.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 941.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 930.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 929.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 928.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 928.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 928.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 927.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 926.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 925.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 910.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 897.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 892.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 884.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 883.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 879.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 876.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 859.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 850.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 841.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 841.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 829.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 818.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 815.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 806.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 795.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 785.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 782.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 772.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 767.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 759.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 759.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 748.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 745.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 741.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 728.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 721.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 711.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 711.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 710.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 702.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 696.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 693.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 683.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 676.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 643.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 639.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 637.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 629.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 606.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 606.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 556.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 540.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 491.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 430.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 424.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 294.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 262.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 260.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 223.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 213.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 175.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2348.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2348.5
FF:10164-103B2 76 years, female 2348.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 749.5
Pig sample Sample description nTPM
Caudate
nTPM: 749.5
Samples: 4

Max nTPM: 881.6
Min nTPM: 628.0
Sample A Female 881.6
Sample B Female 735.8
Sample C Male 752.7
Sample D Male 628.0

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