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GJA1
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  • GJA1
TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
97.824
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:273.6 nTPM
GTEx:129.7 nTPM
FANTOM5:389.3 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA035097Antibody CAB010753
Glial cells HighMedium
Neuronal cells Not detectedMedium




HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA069245
Hippocampal formation mean intensity 97.824
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Polymorph layer of the dentate gyrus 66.781
Molecular layer of the dentate gyrus 51.753
Granular dentate gyrus 20.742
CA1 - oriens layer 53.691
CA1 - pyramidal layer 44.287
CA1 - radiatum layer 55.748
CA2 - oriens layer 67.311
CA2 - pyramidal layer 60.313
CA2 - radiatum layer 70.679
CA3 - oriens layer 58.928
CA3 - pyramidal layer 33.796
CA3 - radiatum layer 78.254
Stratum lucidum 38.040
Lacunosum moleculare 71.020
Subiculum 48.820

HIPPOCAMPUS - HPA Brain RNA-seq
Avg nTPM 273.6
Sample id Sample description nTPM
Hippocampus
nTPM: 273.6
1855 Male, age 76, left hemisphere 300.1
2529 Female, age 94, left hemisphere 293.5
2148 Female, age 91, left hemisphere 291.0
1898 Male, age 80, left hemisphere 265.6
1911 Female, age 85, right hemisphere 260.4
2621 Female, age 67, right hemisphere 231.2

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 129.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 129.7
Samples: 197

Max nTPM: 464.8
Min nTPM: 24.2
Std nTPM: 77.0
Median nTPM: 111.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 464.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 398.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 390.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 323.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 312.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 305.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 304.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 303.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 291.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 279.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 277.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 268.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 263.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 260.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 255.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 249.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 243.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 239.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 239.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 238.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 237.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 236.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 235.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 233.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 224.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 220.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 216.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 216.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 216.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 211.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 208.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 208.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 206.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 204.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 202.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 202.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 200.4
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 188.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 185.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 181.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 181.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 180.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 177.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 175.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 174.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 173.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 169.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 168.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 164.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 163.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 158.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 157.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 156.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 155.9
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 154.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 154.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 153.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 152.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 151.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 151.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 150.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 150.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 147.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 147.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 147.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 146.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 145.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 144.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 144.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 142.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 141.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 141.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 140.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 138.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 138.0
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 137.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 137.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 136.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 134.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 131.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 130.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 129.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 127.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 126.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 123.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 122.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 121.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 117.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 116.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 116.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 115.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 115.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 113.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 112.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 112.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 112.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 111.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 111.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 111.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 106.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 106.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 105.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 105.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 104.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 104.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 103.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 103.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 101.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 101.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 100.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 99.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 99.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 98.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 96.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 96.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 96.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 95.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 95.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 94.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 94.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 93.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 92.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 91.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 90.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 89.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 89.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 89.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 89.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 88.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 88.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 86.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 85.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 85.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 84.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 84.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 84.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 83.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 83.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 83.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 82.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 82.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 80.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 78.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 78.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 77.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 76.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 76.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 75.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 75.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 74.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 73.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 72.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 72.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 70.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 69.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 69.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 67.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 67.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 66.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 65.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 64.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 63.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 63.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 63.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 61.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 61.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 61.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 57.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 56.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 54.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 53.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 52.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 52.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 51.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 50.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 49.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 49.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 47.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 47.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 45.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 44.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 44.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 42.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 42.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 41.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 40.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 39.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 38.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 36.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 36.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 33.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 32.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 32.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 29.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 28.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 28.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 24.2
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 389.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 389.3
FF:10153-102I9 76 years, female 556.7
FF:10169-103B7 60 years, female 221.8

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