BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.8 nTPM
HPA:20.8 nTPM
GTEx:24.4 nTPM
FANTOM5:39.0 Scaled Tags Per Million
Pig:32.2 nTPM
Mouse:18.8 nTPM
Allen mouse:8.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.2
2846 Female, age 79, unknown 21.0
1857 Female, age 85, left hemisphere 19.9
2290 Female, age 72, unknown 19.8
1781 Male, age 74, unknown 19.6
1854 Male, age 80, left hemisphere 18.8
2288 Male, age 75, left hemisphere 16.1
2481 Female, age 94, left hemisphere 16.1
2289 Male, age 61, right hemisphere 14.3
Claustrum
nTPM: 17.2
2392 Female, age 94, both hemispheres 18.7
2491 Male, age 75, both hemispheres 18.2
2196 Female, age 79, unknown 17.7
1956 Male, age 74, unknown 17.4
2198 Male, age 80, both hemispheres 17.1
2568 Male, age 61, both hemispheres 17.0
2284 Female, age 91, both hemispheres 16.6
2645 Female, age 72, unknown 16.6
2292 Female, age 85, both hemispheres 15.4
Globus pallidus, externus
nTPM: 14.0
2395 Male, age 75, both hemispheres 17.7
2772 Female, age 79, unknown 15.0
1996 Male, age 80, right hemisphere 13.3
2567 Female, age 72, unknown 13.0
2646 Male, age 61, right hemisphere 11.1
Globus pallidus, internus
nTPM: 14.4
2287 Male, age 75, right hemisphere 17.1
2483 Female, age 94, right hemisphere 16.1
2037 Male, age 80, right hemisphere 13.9
2778 Female, age 91, both hemispheres 13.8
1818 Male, age 74, unknown 13.6
2111 Female, age 85, right hemisphere 13.4
2566 Female, age 72, unknown 13.0
Nucleus accumbens
nTPM: 20.0
1856 Female, age 91, right hemisphere 23.4
1783 Male, age 74, unknown 22.8
2824 Male, age 61, right hemisphere 21.3
1806 Female, age 85, left hemisphere 20.9
2698 Female, age 72, unknown 19.7
2286 Male, age 75, left hemisphere 19.3
2391 Female, age 94, left hemisphere 17.4
2732 Male, age 80, right hemisphere 15.4
Nucleus basalis of Meynert
nTPM: 15.5
2393 Male, age 80, right hemisphere 18.1
2484 Female, age 94, left hemisphere 16.2
2821 Male, age 75, both hemispheres 15.8
2569 Male, age 61, both hemispheres 11.7
Nucleus of the diagonal band
nTPM: 20.8
2775 Male, age 80, right hemisphere 21.7
2029 Male, age 61, right hemisphere 21.4
1812 Female, age 91, both hemispheres 20.5
2195 Female, age 85, both hemispheres 20.2
1979 Male, age 74, unknown 20.0
Olfactory tubercle
nTPM: 19.8
1846 Male, age 80, right hemisphere 21.7
2487 Female, age 94, left hemisphere 20.2
1998 Female, age 91, both hemispheres 19.8
2856 Male, age 75, right hemisphere 17.4
Putamen
nTPM: 17.8
1937 Female, age 91, right hemisphere 20.2
1838 Male, age 80, right hemisphere 20.0
1829 Male, age 74, unknown 19.6
2466 Female, age 79, unknown 19.5
2482 Female, age 94, left hemisphere 16.1
2647 Male, age 75, left hemisphere 14.8
2489 Female, age 72, unknown 14.6
Septal nuclei
nTPM: 18.9
2031 Female, age 72, unknown 23.1
1960 Male, age 74, unknown 21.0
2009 Female, age 91, both hemispheres 20.7
2629 Female, age 94, right hemisphere 18.6
2059 Female, age 85, both hemispheres 17.5
2199 Male, age 80, right hemisphere 16.7
2394 Male, age 61, left hemisphere 14.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.8
Samples: 246

Max nTPM: 42.0
Min nTPM: 11.3
Std nTPM: 4.7
Median nTPM: 18.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 42.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 32.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 32.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 30.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 30.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 30.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 29.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 29.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 29.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 29.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 29.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.4
Samples: 246

Max nTPM: 38.0
Min nTPM: 12.0
Std nTPM: 6.1
Median nTPM: 25.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 38.0
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 37.1
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 36.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 36.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 35.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 35.2
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 34.7
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 34.7
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 34.7
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 34.3
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 34.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 18.7
Samples: 205

Max nTPM: 30.8
Min nTPM: 10.5
Std nTPM: 4.4
Median nTPM: 17.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 30.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 30.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 30.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 30.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 29.6
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 29.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 29.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 28.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 28.4
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 27.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 27.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 33.9
FF:10164-103B2 76 years, female 33.9
Globus pallidus
Scaled Tags Per Million: 14.8
FF:10161-103A8 76 years, female 19.5
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 30.4
FF:10037-101F1 23-56 years, mixed 30.4
Putamen
Scaled Tags Per Million: 39.0
FF:10176-103C5 60 years, female 39.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 32.2
Pig sample Sample description nTPM
Caudate
nTPM: 29.4
Samples: 4

Max nTPM: 31.8
Min nTPM: 28.3
Sample A Female 28.3
Sample B Female 28.3
Sample C Male 31.8
Sample D Male 29.0
Putamen
nTPM: 32.2
Samples: 4

Max nTPM: 37.2
Min nTPM: 28.2
Sample A Female 28.2
Sample B Female 30.6
Sample C Male 37.2
Sample D Male 32.7
Septum
nTPM: 28.6
Samples: 4

Max nTPM: 30.9
Min nTPM: 27.3
Sample A Female 30.9
Sample B Female 27.3
Sample C Male 27.5
Sample D Male 28.6
Ventral pallidum
nTPM: 28.3
Samples: 4

Max nTPM: 29.7
Min nTPM: 26.2
Sample A Female 29.7
Sample B Female 28.2
Sample C Male 26.2
Sample D Male 29.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 18.1
Samples: 4

Max nTPM: 19.4
Min nTPM: 16.9
Sample A Male 19.4
Sample B Male 18.4
Sample C Female 16.9
Sample D Female 17.7
Septum
nTPM: 18.8
Samples: 4

Max nTPM: 20.3
Min nTPM: 17.3
Sample A Male 20.3
Sample B Male 17.3
Sample C Female 17.9
Sample D Female 19.7
Ventral forebrain
nTPM: 18.8
Samples: 4

Max nTPM: 19.3
Min nTPM: 17.7
Sample A Male 19.3
Sample B Male 19.3
Sample C Female 17.7
Sample D Female 18.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.7
69290704 Antisense, RP_050407_04_E10, Mouse strain C57BL/6J (56 days, male) 8.7
Pallidum
Expression energy: 6.6
69290704 Antisense, RP_050407_04_E10, Mouse strain C57BL/6J (56 days, male) 6.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.