HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:57.1 nTPM
HPA:57.1 nTPM
GTEx:61.5 nTPM
FANTOM5:92.9 Scaled Tags Per Million
Pig:36.1 nTPM
Mouse:142.5 nTPM
Allen mouse:15.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041316
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 57.1
Sample id Sample description nTPM
Hippocampus
nTPM: 55.9
2148 Female, age 91, left hemisphere 57.2
2621 Female, age 67, right hemisphere 56.4
1911 Female, age 85, right hemisphere 56.2
2529 Female, age 94, left hemisphere 55.9
1898 Male, age 80, left hemisphere 55.0
1855 Male, age 76, left hemisphere 54.6
Dentate gyrus
nTPM: 56.3
2531 Female, age 67, both hemispheres 58.0
2530 Female, age 94, left hemisphere 57.6
2246 Female, age 85, both hemispheres 56.6
1927 Female, age 91, both hemispheres 56.3
2010 Male, age 76, both hemispheres 55.4
2528 Male, age 74, both hemispheres 54.0
Entorhinal gyrus
nTPM: 55.5
2686 Male, age 75, right hemisphere 57.4
2613 Female, age 94, left hemisphere 56.1
1787 Male, age 76, left hemisphere 56.0
1938 Female, age 85, left hemisphere 55.1
2764 Male, age 80, right hemisphere 55.1
2117 Female, age 91, right hemisphere 52.9
Hippocampus, CA1
nTPM: 57.0
2749 Male, age 80, left hemisphere 60.6
2082 Female, age 91, right hemisphere 56.4
2045 Male, age 76, both hemispheres 56.0
1873 Female, age 85, both hemispheres 55.9
2527 Male, age 74, both hemispheres 55.9
Hippocampus, CA2
nTPM: 55.3
2437 Female, age 94, left hemisphere 57.7
1892 Male, age 76, both hemispheres 57.1
1940 Female, age 85, left hemisphere 54.8
2113 Female, age 91, right hemisphere 54.6
1963 Male, age 80, left hemisphere 54.1
2249 Male, age 74, both hemispheres 53.4
Hippocampus, CA3
nTPM: 56.0
2137 Male, age 80, left hemisphere 57.5
1867 Male, age 76, both hemispheres 56.6
2436 Male, age 74, both hemispheres 56.2
1891 Female, age 85, both hemispheres 55.5
2620 Female, age 94, left hemisphere 55.4
2861 Female, age 67, both hemispheres 54.9
Parahippocampal cortex
nTPM: 57.1
1850 Male, age 80, both hemispheres 59.1
2692 Male, age 74, both hemispheres 59.1
2532 Female, age 72, left hemisphere 58.2
1990 Female, age 91, right hemisphere 57.1
1933 Female, age 85, both hemispheres 56.9
2018 Male, age 76, both hemispheres 56.8
2250 Female, age 67, right hemisphere 56.6
2245 Female, age 91, both hemispheres 56.5
2622 Female, age 67, right hemisphere 55.5
2693 Female, age 94, both hemispheres 55.2
Perirhinal gyrus
nTPM: 56.7
1794 Male, age 80, right hemisphere 57.5
2521 Female, age 94, right hemisphere 57.4
2848 Male, age 76, right hemisphere 57.4
1841 Female, age 85, right hemisphere 56.0
1847 Female, age 91, left hemisphere 55.1
Subiculum
nTPM: 55.4
1901 Male, age 80, both hemispheres 57.6
2438 Female, age 94, left hemisphere 56.9
2042 Male, age 76, both hemispheres 56.0
1977 Female, age 85, both hemispheres 54.3
2729 Female, age 91, right hemisphere 54.0
2619 Male, age 74, both hemispheres 53.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 61.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 61.5
Samples: 197

Max nTPM: 109.0
Min nTPM: 29.1
Std nTPM: 13.3
Median nTPM: 59.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 109.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 101.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 100.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 96.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 93.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 93.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 91.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 90.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 86.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 85.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 85.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 92.9
FF:10169-103B7 60 years, female 108.8
FF:10153-102I9 76 years, female 77.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 32.5
Samples: 4

Max nTPM: 36.2
Min nTPM: 27.4
Sample A Female 34.1
Sample B Female 36.2
Sample C Male 32.4
Sample D Male 27.4
Entorhinal cortex
nTPM: 36.1
Samples: 4

Max nTPM: 44.0
Min nTPM: 30.2
Sample A Female 30.2
Sample B Female 44.0
Sample C Male 37.1
Sample D Male 33.0
Subiculum
nTPM: 31.4
Samples: 4

Max nTPM: 35.6
Min nTPM: 26.6
Sample A Female 35.6
Sample B Female 34.0
Sample C Male 26.6
Sample D Male 29.4
Ventral hippocampus
nTPM: 28.9
Samples: 4

Max nTPM: 31.1
Min nTPM: 25.6
Sample A Female 25.6
Sample B Female 31.1
Sample C Male 29.1
Sample D Male 29.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 142.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 142.5
Samples: 4

Max nTPM: 148.3
Min nTPM: 129.3
Sample A Male 129.3
Sample B Male 146.6
Sample C Female 148.3
Sample D Female 145.8
Hippocampal formation
nTPM: 135.2
Samples: 4

Max nTPM: 151.5
Min nTPM: 128.5
Sample A Male 151.5
Sample B Male 129.3
Sample C Female 131.6
Sample D Female 128.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 15.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.1
70431229 Antisense, RP_050614_02_D09, Mouse strain C57BL/6J (56 days, male) 15.1

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