BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA:28.0 nTPM
GTEx:19.8 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:7.4 nTPM
Allen mouse:0.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 28.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.3
2289 Male, age 61, right hemisphere 25.9
2481 Female, age 94, left hemisphere 25.9
1781 Male, age 74, unknown 18.0
2288 Male, age 75, left hemisphere 18.0
2290 Female, age 72, unknown 18.0
1854 Male, age 80, left hemisphere 17.5
1857 Female, age 85, left hemisphere 16.3
2846 Female, age 79, unknown 15.1
Claustrum
nTPM: 21.5
2645 Female, age 72, unknown 26.0
2491 Male, age 75, both hemispheres 23.9
2284 Female, age 91, both hemispheres 22.0
1956 Male, age 74, unknown 21.6
2196 Female, age 79, unknown 20.5
2392 Female, age 94, both hemispheres 20.5
2568 Male, age 61, both hemispheres 20.2
2198 Male, age 80, both hemispheres 19.7
2292 Female, age 85, both hemispheres 18.9
Globus pallidus, externus
nTPM: 23.4
2646 Male, age 61, right hemisphere 32.1
2567 Female, age 72, unknown 24.5
1996 Male, age 80, right hemisphere 23.0
2772 Female, age 79, unknown 19.2
2395 Male, age 75, both hemispheres 18.5
Globus pallidus, internus
nTPM: 23.8
2483 Female, age 94, right hemisphere 26.7
1818 Male, age 74, unknown 25.1
2111 Female, age 85, right hemisphere 24.1
2566 Female, age 72, unknown 23.0
2778 Female, age 91, both hemispheres 22.8
2037 Male, age 80, right hemisphere 22.6
2287 Male, age 75, right hemisphere 22.3
Nucleus accumbens
nTPM: 19.0
2732 Male, age 80, right hemisphere 24.0
2391 Female, age 94, left hemisphere 21.2
2286 Male, age 75, left hemisphere 20.4
1806 Female, age 85, left hemisphere 19.2
1783 Male, age 74, unknown 17.5
2698 Female, age 72, unknown 17.3
1856 Female, age 91, right hemisphere 16.4
2824 Male, age 61, right hemisphere 16.0
Nucleus basalis of Meynert
nTPM: 22.1
2569 Male, age 61, both hemispheres 31.4
2484 Female, age 94, left hemisphere 21.0
2821 Male, age 75, both hemispheres 18.3
2393 Male, age 80, right hemisphere 17.7
Nucleus of the diagonal band
nTPM: 28.0
1979 Male, age 74, unknown 30.2
1812 Female, age 91, both hemispheres 29.9
2195 Female, age 85, both hemispheres 29.7
2775 Male, age 80, right hemisphere 28.7
2029 Male, age 61, right hemisphere 21.4
Olfactory tubercle
nTPM: 23.7
1846 Male, age 80, right hemisphere 25.1
2487 Female, age 94, left hemisphere 25.1
1998 Female, age 91, both hemispheres 22.6
2856 Male, age 75, right hemisphere 22.2
Putamen
nTPM: 19.2
2647 Male, age 75, left hemisphere 25.4
2489 Female, age 72, unknown 22.9
2482 Female, age 94, left hemisphere 20.4
1829 Male, age 74, unknown 18.5
2466 Female, age 79, unknown 16.6
1838 Male, age 80, right hemisphere 15.6
1937 Female, age 91, right hemisphere 15.2
Septal nuclei
nTPM: 27.7
2059 Female, age 85, both hemispheres 32.9
2199 Male, age 80, right hemisphere 30.1
1960 Male, age 74, unknown 29.2
2009 Female, age 91, both hemispheres 28.1
2031 Female, age 72, unknown 27.7
2629 Female, age 94, right hemisphere 23.6
2394 Male, age 61, left hemisphere 22.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.8
Samples: 246

Max nTPM: 54.0
Min nTPM: 4.6
Std nTPM: 7.2
Median nTPM: 18.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 54.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 39.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 38.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 38.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 38.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 37.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 36.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 36.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 34.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 34.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 34.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.0
Samples: 246

Max nTPM: 45.2
Min nTPM: 5.5
Std nTPM: 7.4
Median nTPM: 17.1
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 45.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 43.7
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 43.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 42.5
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 41.6
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 41.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 40.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 39.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 37.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 36.0
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 34.5
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Brain - Putamen (basal ganglia)
Average nTPM: 18.2
Samples: 205

Max nTPM: 39.0
Min nTPM: 4.8
Std nTPM: 6.9
Median nTPM: 16.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 39.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 38.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 36.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 33.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 33.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 32.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 32.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 32.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 31.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 29.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 29.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.9
FF:10164-103B2 76 years, female 2.9
Globus pallidus
Scaled Tags Per Million: 1.7
FF:10161-103A8 76 years, female 2.7
FF:10175-103C4 60 years, female 0.7
Nucleus accumbens
Scaled Tags Per Million: 1.9
FF:10037-101F1 23-56 years, mixed 1.9
Putamen
Scaled Tags Per Million: 1.8
FF:10176-103C5 60 years, female 1.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Caudate
nTPM: 6.5
Samples: 4

Max nTPM: 7.1
Min nTPM: 6.0
Sample A Female 7.1
Sample B Female 6.5
Sample C Male 6.2
Sample D Male 6.0
Putamen
nTPM: 6.2
Samples: 4

Max nTPM: 8.6
Min nTPM: 4.6
Sample A Female 8.6
Sample B Female 4.6
Sample C Male 5.8
Sample D Male 5.8
Septum
nTPM: 7.3
Samples: 4

Max nTPM: 9.4
Min nTPM: 5.2
Sample A Female 6.9
Sample B Female 5.2
Sample C Male 7.6
Sample D Male 9.4
Ventral pallidum
nTPM: 6.5
Samples: 4

Max nTPM: 10.2
Min nTPM: 5.1
Sample A Female 5.1
Sample B Female 5.3
Sample C Male 10.2
Sample D Male 5.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.3
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.6
Sample A Male 4.6
Sample B Male 5.7
Sample C Female 5.3
Sample D Female 5.7
Septum
nTPM: 5.6
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.7
Sample A Male 5.3
Sample B Male 6.4
Sample C Female 4.7
Sample D Female 5.9
Ventral forebrain
nTPM: 7.4
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.2
Sample A Male 8.9
Sample B Male 6.2
Sample C Female 6.8
Sample D Female 7.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
67765718 Antisense, RP_040916_01_F01, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.5
67765718 Antisense, RP_040916_01_F01, Mouse strain C57BL/6J (56 days, male) 0.5

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