MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84.8 nTPM
HPA:84.8 nTPM
GTEx:44.9 nTPM
FANTOM5:36.6 Scaled Tags Per Million
Pig:120.1 nTPM
Mouse:62.3 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.7
2586 Male, age 75, left hemisphere 76.0
2019 Male, age 18, unknown 71.3
1827 Male, age 72, unknown 67.1
2828 Female, age 72, unknown 66.9
2219 Male, age 76, both hemispheres 65.2
2666 Male, age 74, left hemisphere 61.3
1833 Male, age 53, unknown 56.1
2411 Female, age 72, unknown 54.3
1870 Female, age 42, unknown 50.8
1830 Male, age 51, unknown 48.4
Dorsal raphe nucleus
nTPM: 63.1
2298 Female, age 72, unknown 72.2
2016 Female, age 72, unknown 71.0
1828 Male, age 53, unknown 68.8
2047 Male, age 72, unknown 53.4
2750 Male, age 76, both hemispheres 50.4
Inferior colliculus
nTPM: 60.2
2097 Female, age 72, unknown 68.7
1890 Male, age 53, unknown 62.2
1848 Female, age 42, unknown 57.7
2849 Male, age 72, unknown 52.1
Median raphe nucleus
nTPM: 54.5
2220 Male, age 76, midline 54.5
Pedunculopontine tegmental nucleus
nTPM: 54.7
1921 Female, age 85, both hemispheres 59.6
2334 Male, age 80, both hemispheres 58.8
2338 Male, age 61, both hemispheres 45.7
Periaquaductal grey, anterior
nTPM: 60.8
1795 Male, age 51, unknown 73.5
2502 Female, age 75, unknown 60.6
1947 Male, age 18, unknown 48.3
Periaquaductal grey, dorsal
nTPM: 74.7
1831 Male, age 72, unknown 90.4
1840 Male, age 53, unknown 72.9
2850 Male, age 76, both hemispheres 70.0
2464 Female, age 72, unknown 65.6
Periaquaductal grey, lateral
nTPM: 70.2
2272 Male, age 74, both hemispheres 77.2
2053 Male, age 18, unknown 67.0
2140 Male, age 76, both hemispheres 66.3
Pretectal area
nTPM: 84.8
1816 Male, age 51, unknown 139.2
1944 Female, age 72, unknown 110.5
1815 Male, age 53, unknown 105.0
1817 Female, age 42, unknown 99.2
2007 Male, age 72, unknown 96.8
2224 Female, age 72, unknown 79.3
2273 Male, age 74, both hemispheres 77.4
2667 Female, age 75, unknown 66.0
2407 Male, age 75, both hemispheres 55.5
2825 Male, age 18, unknown 52.6
2316 Male, age 76, right hemisphere 51.1
Red nucleus
nTPM: 54.9
2503 Female, age 72, unknown 70.1
2785 Male, age 18, unknown 68.4
2725 Female, age 75, unknown 67.6
2823 Male, age 76, right hemisphere 56.0
1821 Female, age 72, unknown 55.9
1904 Male, age 53, unknown 51.2
2588 Male, age 74, left hemisphere 50.9
2584 Male, age 75, left hemisphere 49.5
2769 Male, age 72, unknown 48.4
2227 Male, age 72, unknown 48.2
1954 Female, age 42, unknown 46.9
1865 Male, age 51, unknown 46.0
Substantia nigra
nTPM: 75.4
1889 Female, age 72, unknown 90.7
1916 Female, age 42, unknown 87.8
2409 Female, age 72, unknown 79.7
1851 Male, age 51, unknown 79.6
2699 Male, age 18, unknown 77.4
2241 Male, age 72, unknown 77.3
2590 Female, age 75, unknown 71.4
2583 Male, age 75, right hemisphere 68.6
2665 Male, age 74, both hemispheres 61.4
1941 Male, age 53, unknown 60.1
Superior colliculus
nTPM: 72.9
2087 Female, age 72, unknown 97.2
2261 Male, age 18, unknown 93.1
1796 Male, age 53, unknown 81.0
1913 Female, age 42, unknown 75.6
1995 Male, age 72, unknown 75.6
2668 Female, age 75, unknown 68.8
2664 Male, age 75, both hemispheres 68.2
2587 Male, age 74, left hemisphere 61.6
1839 Male, age 51, unknown 54.4
1895 Male, age 76, right hemisphere 53.2
Ventral tegmental area
nTPM: 66.6
2218 Male, age 76, both hemispheres 79.4
2410 Female, age 72, unknown 78.3
1915 Female, age 42, unknown 68.1
1942 Male, age 51, unknown 62.0
2021 Male, age 53, unknown 56.9
2223 Female, age 72, unknown 55.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.9
Samples: 139

Max nTPM: 129.0
Min nTPM: 0.0
Std nTPM: 25.4
Median nTPM: 43.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 129.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 104.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 94.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 94.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 93.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 92.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 90.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 89.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 86.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 85.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 84.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.6
FF:10158-103A5 76 years, female 36.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 120.1
Pig sample Sample description nTPM
Midbrain
nTPM: 120.1
Samples: 4

Max nTPM: 207.2
Min nTPM: 32.7
Sample A Female 32.7
Sample B Female 155.9
Sample C Male 207.2
Sample D Male 84.5
Periaqueductal gray
nTPM: 110.8
Samples: 3

Max nTPM: 127.9
Min nTPM: 84.6
Sample B Female 127.9
Sample C Male 119.8
Sample D Male 84.6
Substantia nigra
nTPM: 113.1
Samples: 4

Max nTPM: 146.3
Min nTPM: 87.3
Sample A Female 124.2
Sample B Female 94.4
Sample C Male 146.3
Sample D Male 87.3
Superior colliculi
nTPM: 104.8
Samples: 4

Max nTPM: 150.6
Min nTPM: 52.9
Sample A Female 98.4
Sample B Female 52.9
Sample C Male 150.6
Sample D Male 117.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.3
Samples: 4

Max nTPM: 64.7
Min nTPM: 61.1
Sample A Male 61.3
Sample B Male 61.1
Sample C Female 64.7
Sample D Female 62.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
70431283 Antisense, RP_050614_02_E07, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.