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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:72.4 nTPM
GTEx:213.2 nTPM
FANTOM5:1266.7 Scaled Tags Per Million
Pig:532.5 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 72.4
Sample id Sample description nTPM
Putamen
nTPM: 72.4
1937 Female, age 91, right hemisphere 102.5
1838 Male, age 80, right hemisphere 97.0
2466 Female, age 79, unknown 77.8
1829 Male, age 74, unknown 75.9
2647 Male, age 75, left hemisphere 61.8
2489 Female, age 72, unknown 46.5
2482 Female, age 94, left hemisphere 45.5

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 213.2
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 213.2
Samples: 205

Max nTPM: 507.7
Min nTPM: 17.5
Std nTPM: 112.0
Median nTPM: 217.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 507.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 469.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 466.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 433.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 420.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 416.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 413.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 412.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 407.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 399.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 390.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 386.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 384.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 383.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 382.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 370.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 368.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 366.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 365.5
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 363.4
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 359.6
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 353.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 353.5
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 350.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 347.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 346.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 343.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 343.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 343.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 339.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 335.6
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 332.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 331.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 330.8
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 325.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 324.3
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 319.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 318.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 317.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 316.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 316.1
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 313.3
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 310.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 309.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 309.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 307.0
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 306.8
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 305.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 305.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 302.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 300.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 299.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 295.5
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 295.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 291.4
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 291.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 288.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 287.4
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 285.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 285.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 285.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 282.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 282.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 280.8
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 280.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 280.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 278.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 276.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 276.7
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 276.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 270.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 269.3
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 264.3
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 264.2
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 263.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 261.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 258.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 258.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 255.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 255.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 251.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 246.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 244.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 243.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 241.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 241.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 238.3
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 237.8
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 236.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 232.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 229.6
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 229.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 229.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 227.9
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 226.6
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 224.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 224.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 223.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 222.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 220.3
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 220.3
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 218.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 217.3
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 217.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 217.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 216.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 215.1
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 212.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 211.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 210.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 209.2
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 205.1
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 203.9
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 203.0
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 201.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 200.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 198.5
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 197.7
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 191.4
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 190.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 187.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 185.7
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 184.6
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 177.3
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 177.1
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 177.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 176.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 174.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 173.2
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 171.8
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 170.4
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 167.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 166.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 165.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 156.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 154.8
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 154.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 151.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 150.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 149.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 147.2
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 146.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 142.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 137.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 136.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 132.9
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 128.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 126.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 123.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 121.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 121.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 117.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 115.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 114.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 113.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 112.6
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 109.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 101.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 100.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 98.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 97.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 94.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 90.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 88.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 88.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 87.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 87.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 85.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 84.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 84.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 83.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 82.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 81.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 80.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 74.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 74.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 71.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 71.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 70.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 69.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 66.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 66.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 65.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 61.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 61.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 60.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 58.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 57.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 56.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 55.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 51.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 48.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 47.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 47.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 44.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 43.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 41.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 41.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 33.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 32.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 24.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 22.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 19.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 18.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 17.5
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1266.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 1266.7
FF:10176-103C5 60 years, female 1266.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 532.5
Pig sample Sample description nTPM
Putamen
nTPM: 532.6
Samples: 4

Max nTPM: 849.0
Min nTPM: 239.5
Sample A Female 239.5
Sample B Female 450.3
Sample C Male 849.0
Sample D Male 591.4

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