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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:119.9 nTPM
HPA:119.9 nTPM
GTEx:934.9 nTPM
FANTOM5:1363.6 Scaled Tags Per Million
Pig:594.4 nTPM
Mouse:785.5 nTPM
Allen mouse:38.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 119.9
Sample id Sample description nTPM
Amygdala
nTPM: 0.0
1987 Female, age 91, left hemisphere 0.0
2514 Male, age 75, right hemisphere 0.0
2517 Female, age 94, left hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 24.3
2243 Female, age 91, right hemisphere 112.5
2685 Female, age 94, left hemisphere 30.1
2110 Male, age 80, left hemisphere 3.1
1955 Male, age 76, both hemispheres 0.0
2609 Male, age 75, right hemisphere 0.0
2827 Female, age 67, right hemisphere 0.0
Central amygdala
nTPM: 72.1
2826 Female, age 94, left hemisphere 234.7
2239 Male, age 80, left hemisphere 125.9
1905 Male, age 76, both hemispheres 0.0
2515 Male, age 75, right hemisphere 0.0
2701 Female, age 91, right hemisphere 0.0
Corticomedial amygdala
nTPM: 15.5
2829 Male, age 80, left hemisphere 93.2
2240 Male, age 76, both hemispheres 0.0
2242 Female, age 91, right hemisphere 0.0
2428 Male, age 75, right hemisphere 0.0
2429 Female, age 94, left hemisphere 0.0
2535 Female, age 67, right hemisphere 0.0
Lateral amygdala
nTPM: 80.6
2534 Female, age 94, left hemisphere 309.2
2256 Male, age 80, left hemisphere 174.5
1883 Male, age 76, both hemispheres 0.0
2255 Female, age 91, right hemisphere 0.0
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 119.9
1974 Female, age 91, both hemispheres 210.1
2486 Female, age 94, both hemispheres 149.5
2201 Male, age 74, unknown 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 934.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 934.9
Samples: 152

Max nTPM: 3695.0
Min nTPM: 51.7
Std nTPM: 616.4
Median nTPM: 761.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3695.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 3073.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2911.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2825.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2445.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2297.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2232.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2172.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2058.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2018.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1943.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1886.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1849.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1803.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1770.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1696.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1659.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1630.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1624.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1555.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1535.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1482.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1468.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1443.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1438.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1387.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1379.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1354.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1314.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1290.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1277.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1267.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1260.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1258.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1257.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1246.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1213.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1212.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1195.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1192.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1190.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1184.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1181.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1178.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1148.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1138.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1131.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1124.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1094.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1075.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1072.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1067.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1066.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1060.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1059.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1057.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1053.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1038.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1001.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 981.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 949.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 932.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 918.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 907.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 898.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 883.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 855.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 834.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 822.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 791.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 787.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 785.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 782.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 782.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 776.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 763.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 759.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 759.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 740.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 723.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 722.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 714.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 711.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 710.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 704.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 701.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 681.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 680.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 677.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 674.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 674.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 672.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 669.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 653.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 652.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 644.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 625.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 624.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 622.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 607.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 599.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 592.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 589.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 584.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 581.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 569.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 568.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 560.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 553.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 553.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 528.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 528.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 526.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 511.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 489.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 480.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 479.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 476.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 475.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 474.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 471.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 461.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 459.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 456.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 444.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 434.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 430.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 424.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 405.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 381.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 363.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 362.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 361.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 360.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 359.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 341.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 333.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 324.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 294.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 276.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 275.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 258.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 248.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 224.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 198.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 197.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 188.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 180.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 168.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 141.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 96.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 51.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1363.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1363.6
FF:10151-102I7 76 years, female 1363.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 594.4
Pig sample Sample description nTPM
Amygdala
nTPM: 594.5
Samples: 4

Max nTPM: 774.1
Min nTPM: 436.6
Sample A Female 774.1
Sample B Female 658.8
Sample C Male 508.3
Sample D Male 436.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 785.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 785.6
Samples: 4

Max nTPM: 1227.0
Min nTPM: 611.5
Sample A Male 611.5
Sample B Male 668.4
Sample C Female 1227.0
Sample D Female 635.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 38.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 38.9
69153790 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 38.9
69153759 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 30.2
736 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 11.2
737 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 10.2

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