BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.4 nTPM
HPA:5.4 nTPM
GTEx:3.9 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:1.7 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.8
1857 Female, age 85, left hemisphere 7.2
2290 Female, age 72, unknown 4.8
1781 Male, age 74, unknown 3.9
1854 Male, age 80, left hemisphere 3.8
2289 Male, age 61, right hemisphere 3.5
2846 Female, age 79, unknown 2.7
2481 Female, age 94, left hemisphere 2.4
2288 Male, age 75, left hemisphere 2.0
Claustrum
nTPM: 1.8
2196 Female, age 79, unknown 4.0
2491 Male, age 75, both hemispheres 2.9
2645 Female, age 72, unknown 2.6
2392 Female, age 94, both hemispheres 2.0
2568 Male, age 61, both hemispheres 1.8
2284 Female, age 91, both hemispheres 1.5
1956 Male, age 74, unknown 0.9
2198 Male, age 80, both hemispheres 0.4
2292 Female, age 85, both hemispheres 0.4
Globus pallidus, externus
nTPM: 0.9
2567 Female, age 72, unknown 1.5
2646 Male, age 61, right hemisphere 1.2
1996 Male, age 80, right hemisphere 0.9
2395 Male, age 75, both hemispheres 0.9
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 1.0
2037 Male, age 80, right hemisphere 2.1
1818 Male, age 74, unknown 1.7
2483 Female, age 94, right hemisphere 1.2
2566 Female, age 72, unknown 1.2
2287 Male, age 75, right hemisphere 0.6
2111 Female, age 85, right hemisphere 0.5
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 3.7
1806 Female, age 85, left hemisphere 6.1
1856 Female, age 91, right hemisphere 6.0
2732 Male, age 80, right hemisphere 3.5
1783 Male, age 74, unknown 3.2
2698 Female, age 72, unknown 3.0
2824 Male, age 61, right hemisphere 2.8
2286 Male, age 75, left hemisphere 2.6
2391 Female, age 94, left hemisphere 2.1
Nucleus basalis of Meynert
nTPM: 2.8
2393 Male, age 80, right hemisphere 3.5
2569 Male, age 61, both hemispheres 3.2
2821 Male, age 75, both hemispheres 2.5
2484 Female, age 94, left hemisphere 2.0
Nucleus of the diagonal band
nTPM: 5.4
2195 Female, age 85, both hemispheres 7.5
1979 Male, age 74, unknown 5.8
2029 Male, age 61, right hemisphere 5.3
2775 Male, age 80, right hemisphere 4.9
1812 Female, age 91, both hemispheres 3.5
Olfactory tubercle
nTPM: 4.2
2487 Female, age 94, left hemisphere 5.0
2856 Male, age 75, right hemisphere 4.6
1998 Female, age 91, both hemispheres 3.7
1846 Male, age 80, right hemisphere 3.4
Putamen
nTPM: 2.9
1937 Female, age 91, right hemisphere 4.6
2647 Male, age 75, left hemisphere 4.2
1838 Male, age 80, right hemisphere 3.6
2489 Female, age 72, unknown 3.0
2482 Female, age 94, left hemisphere 2.3
2466 Female, age 79, unknown 1.5
1829 Male, age 74, unknown 1.1
Septal nuclei
nTPM: 4.8
2009 Female, age 91, both hemispheres 6.0
2199 Male, age 80, right hemisphere 5.4
2629 Female, age 94, right hemisphere 5.4
2059 Female, age 85, both hemispheres 4.9
1960 Male, age 74, unknown 4.8
2394 Male, age 61, left hemisphere 3.6
2031 Female, age 72, unknown 3.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.9
Samples: 246

Max nTPM: 9.2
Min nTPM: 1.3
Std nTPM: 1.4
Median nTPM: 3.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 9.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 8.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 8.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 8.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 8.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 7.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 7.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 7.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 7.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 7.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.4
Samples: 246

Max nTPM: 11.5
Min nTPM: 1.5
Std nTPM: 1.3
Median nTPM: 3.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 11.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 10.6
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 8.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 7.9
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 7.5
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 7.3
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 6.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 6.2
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 6.1
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 5.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 5.8
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Brain - Putamen (basal ganglia)
Average nTPM: 3.5
Samples: 205

Max nTPM: 7.8
Min nTPM: 1.2
Std nTPM: 1.2
Median nTPM: 3.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 7.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 7.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 7.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 7.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 6.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 6.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 6.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 6.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 5.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 5.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 5.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.5
FF:10164-103B2 76 years, female 18.5
Globus pallidus
Scaled Tags Per Million: 8.9
FF:10161-103A8 76 years, female 12.2
FF:10175-103C4 60 years, female 5.5
Nucleus accumbens
Scaled Tags Per Million: 5.9
FF:10037-101F1 23-56 years, mixed 5.9
Putamen
Scaled Tags Per Million: 9.9
FF:10176-103C5 60 years, female 9.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Caudate
nTPM: 6.4
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.7
Sample A Female 7.5
Sample B Female 5.7
Sample C Male 6.2
Sample D Male 6.1
Putamen
nTPM: 6.1
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.4
Sample A Female 7.1
Sample B Female 6.2
Sample C Male 5.4
Sample D Male 5.5
Septum
nTPM: 6.6
Samples: 4

Max nTPM: 7.1
Min nTPM: 6.1
Sample A Female 7.1
Sample B Female 6.1
Sample C Male 6.6
Sample D Male 6.4
Ventral pallidum
nTPM: 6.0
Samples: 4

Max nTPM: 7.8
Min nTPM: 4.9
Sample A Female 7.8
Sample B Female 5.6
Sample C Male 4.9
Sample D Male 5.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.6
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.1
Sample A Male 1.2
Sample B Male 1.4
Sample C Female 2.6
Sample D Female 1.1
Septum
nTPM: 1.7
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.0
Sample A Male 1.7
Sample B Male 1.0
Sample C Female 1.9
Sample D Female 2.2
Ventral forebrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.6
Sample A Male 1.2
Sample B Male 0.6
Sample C Female 0.7
Sample D Female 1.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
73716495 Antisense, RP_051206_03_B09, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
73716495 Antisense, RP_051206_03_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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