BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.8 nTPM
HPA:28.8 nTPM
GTEx:24.5 nTPM
FANTOM5:33.1 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:1.0 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 28.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 26.3
2481 Female, age 94, left hemisphere 29.7
1857 Female, age 85, left hemisphere 27.1
2290 Female, age 72, unknown 26.0
2846 Female, age 79, unknown 26.0
2289 Male, age 61, right hemisphere 25.9
1781 Male, age 74, unknown 25.6
1854 Male, age 80, left hemisphere 25.6
2288 Male, age 75, left hemisphere 24.5
Claustrum
nTPM: 27.0
2198 Male, age 80, both hemispheres 29.6
2491 Male, age 75, both hemispheres 28.8
2645 Female, age 72, unknown 28.2
2284 Female, age 91, both hemispheres 27.9
2292 Female, age 85, both hemispheres 26.2
2392 Female, age 94, both hemispheres 26.2
2568 Male, age 61, both hemispheres 25.6
2196 Female, age 79, unknown 25.5
1956 Male, age 74, unknown 25.2
Globus pallidus, externus
nTPM: 28.8
2567 Female, age 72, unknown 29.1
1996 Male, age 80, right hemisphere 29.0
2772 Female, age 79, unknown 28.8
2646 Male, age 61, right hemisphere 28.6
2395 Male, age 75, both hemispheres 28.5
Globus pallidus, internus
nTPM: 27.5
2483 Female, age 94, right hemisphere 32.7
2287 Male, age 75, right hemisphere 29.3
2566 Female, age 72, unknown 28.4
1818 Male, age 74, unknown 27.2
2037 Male, age 80, right hemisphere 26.3
2778 Female, age 91, both hemispheres 24.5
2111 Female, age 85, right hemisphere 24.0
Nucleus accumbens
nTPM: 26.4
1856 Female, age 91, right hemisphere 27.8
1806 Female, age 85, left hemisphere 27.3
1783 Male, age 74, unknown 26.9
2286 Male, age 75, left hemisphere 26.5
2698 Female, age 72, unknown 26.2
2391 Female, age 94, left hemisphere 26.1
2732 Male, age 80, right hemisphere 25.6
2824 Male, age 61, right hemisphere 24.4
Nucleus basalis of Meynert
nTPM: 26.7
2569 Male, age 61, both hemispheres 29.3
2393 Male, age 80, right hemisphere 26.9
2484 Female, age 94, left hemisphere 25.9
2821 Male, age 75, both hemispheres 24.7
Nucleus of the diagonal band
nTPM: 27.6
2775 Male, age 80, right hemisphere 29.1
1812 Female, age 91, both hemispheres 29.0
1979 Male, age 74, unknown 28.4
2195 Female, age 85, both hemispheres 26.9
2029 Male, age 61, right hemisphere 24.5
Olfactory tubercle
nTPM: 26.3
1998 Female, age 91, both hemispheres 27.6
1846 Male, age 80, right hemisphere 26.7
2856 Male, age 75, right hemisphere 26.0
2487 Female, age 94, left hemisphere 25.0
Putamen
nTPM: 26.4
2647 Male, age 75, left hemisphere 28.3
2466 Female, age 79, unknown 27.4
2482 Female, age 94, left hemisphere 27.0
1937 Female, age 91, right hemisphere 26.2
1838 Male, age 80, right hemisphere 26.1
2489 Female, age 72, unknown 25.2
1829 Male, age 74, unknown 24.6
Septal nuclei
nTPM: 27.2
2031 Female, age 72, unknown 28.9
1960 Male, age 74, unknown 28.7
2059 Female, age 85, both hemispheres 27.9
2394 Male, age 61, left hemisphere 27.2
2009 Female, age 91, both hemispheres 27.0
2199 Male, age 80, right hemisphere 26.6
2629 Female, age 94, right hemisphere 24.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.7
Samples: 246

Max nTPM: 49.1
Min nTPM: 10.3
Std nTPM: 4.8
Median nTPM: 20.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 49.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 46.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 35.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 34.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 34.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 33.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 32.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 32.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 31.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 31.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 30.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.5
Samples: 246

Max nTPM: 56.2
Min nTPM: 14.6
Std nTPM: 5.3
Median nTPM: 23.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 56.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 51.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 39.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 39.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 37.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 37.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 37.1
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 36.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 36.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 35.3
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 33.7
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Brain - Putamen (basal ganglia)
Average nTPM: 22.7
Samples: 205

Max nTPM: 42.8
Min nTPM: 13.0
Std nTPM: 5.2
Median nTPM: 22.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 42.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 42.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 39.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 39.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 35.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 35.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 34.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 34.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 33.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 33.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 32.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.9
FF:10164-103B2 76 years, female 31.9
Globus pallidus
Scaled Tags Per Million: 29.5
FF:10161-103A8 76 years, female 36.1
FF:10175-103C4 60 years, female 22.8
Nucleus accumbens
Scaled Tags Per Million: 23.3
FF:10037-101F1 23-56 years, mixed 23.3
Putamen
Scaled Tags Per Million: 33.1
FF:10176-103C5 60 years, female 33.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Caudate
nTPM: 22.6
Samples: 4

Max nTPM: 28.7
Min nTPM: 16.4
Sample A Female 16.4
Sample B Female 24.1
Sample C Male 28.7
Sample D Male 21.0
Putamen
nTPM: 22.3
Samples: 4

Max nTPM: 37.5
Min nTPM: 11.9
Sample A Female 11.9
Sample B Female 17.5
Sample C Male 37.5
Sample D Male 22.2
Septum
nTPM: 13.6
Samples: 4

Max nTPM: 16.9
Min nTPM: 10.8
Sample A Female 12.2
Sample B Female 14.5
Sample C Male 16.9
Sample D Male 10.8
Ventral pallidum
nTPM: 16.6
Samples: 4

Max nTPM: 22.4
Min nTPM: 13.0
Sample A Female 13.0
Sample B Female 22.4
Sample C Male 16.2
Sample D Male 14.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.5
Sample A Male 0.6
Sample B Male 0.6
Sample C Female 0.5
Sample D Female 1.0
Septum
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.9
Sample A Male 1.2
Sample B Male 0.9
Sample C Female 1.0
Sample D Female 1.0
Ventral forebrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.5
Sample A Male 0.9
Sample B Male 1.0
Sample C Female 0.6
Sample D Female 0.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
80525367 Antisense, RP_071018_03_B07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
80525367 Antisense, RP_071018_03_B07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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