MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.2 nTPM
HPA:34.2 nTPM
GTEx:14.1 nTPM
FANTOM5:60.9 Scaled Tags Per Million
Pig:77.0 nTPM
Mouse:44.4 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.2
2666 Male, age 74, left hemisphere 35.7
2828 Female, age 72, unknown 31.9
1827 Male, age 72, unknown 30.4
2019 Male, age 18, unknown 29.4
1833 Male, age 53, unknown 26.6
2586 Male, age 75, left hemisphere 25.2
1870 Female, age 42, unknown 22.3
1830 Male, age 51, unknown 22.2
2219 Male, age 76, both hemispheres 20.2
2411 Female, age 72, unknown 17.8
Dorsal raphe nucleus
nTPM: 24.1
2016 Female, age 72, unknown 30.9
1828 Male, age 53, unknown 26.8
2298 Female, age 72, unknown 25.3
2750 Male, age 76, both hemispheres 19.8
2047 Male, age 72, unknown 17.6
Inferior colliculus
nTPM: 22.3
2849 Male, age 72, unknown 31.0
1848 Female, age 42, unknown 22.4
1890 Male, age 53, unknown 18.9
2097 Female, age 72, unknown 16.9
Median raphe nucleus
nTPM: 22.8
2220 Male, age 76, midline 22.8
Pedunculopontine tegmental nucleus
nTPM: 23.8
2338 Male, age 61, both hemispheres 26.9
2334 Male, age 80, both hemispheres 26.2
1921 Female, age 85, both hemispheres 18.2
Periaquaductal grey, anterior
nTPM: 26.7
1795 Male, age 51, unknown 30.6
2502 Female, age 75, unknown 29.2
1947 Male, age 18, unknown 20.2
Periaquaductal grey, dorsal
nTPM: 32.5
2850 Male, age 76, both hemispheres 38.6
1831 Male, age 72, unknown 36.7
1840 Male, age 53, unknown 30.4
2464 Female, age 72, unknown 24.1
Periaquaductal grey, lateral
nTPM: 34.2
2272 Male, age 74, both hemispheres 39.7
2140 Male, age 76, both hemispheres 35.7
2053 Male, age 18, unknown 27.1
Pretectal area
nTPM: 33.3
2273 Male, age 74, both hemispheres 40.8
1816 Male, age 51, unknown 40.6
1944 Female, age 72, unknown 38.9
1817 Female, age 42, unknown 38.6
1815 Male, age 53, unknown 35.2
2007 Male, age 72, unknown 32.6
2224 Female, age 72, unknown 31.8
2667 Female, age 75, unknown 30.1
2407 Male, age 75, both hemispheres 29.9
2825 Male, age 18, unknown 25.6
2316 Male, age 76, right hemisphere 22.1
Red nucleus
nTPM: 21.5
2725 Female, age 75, unknown 30.8
2785 Male, age 18, unknown 28.3
2503 Female, age 72, unknown 27.0
2823 Male, age 76, right hemisphere 23.7
2588 Male, age 74, left hemisphere 22.3
2227 Male, age 72, unknown 20.7
1954 Female, age 42, unknown 19.4
2769 Male, age 72, unknown 18.8
1821 Female, age 72, unknown 17.8
1904 Male, age 53, unknown 17.1
1865 Male, age 51, unknown 16.6
2584 Male, age 75, left hemisphere 15.7
Substantia nigra
nTPM: 18.5
1889 Female, age 72, unknown 26.0
2699 Male, age 18, unknown 25.3
1916 Female, age 42, unknown 20.1
2665 Male, age 74, both hemispheres 20.1
1941 Male, age 53, unknown 19.5
1851 Male, age 51, unknown 18.2
2583 Male, age 75, right hemisphere 15.0
2590 Female, age 75, unknown 14.8
2409 Female, age 72, unknown 13.5
2241 Male, age 72, unknown 12.3
Superior colliculus
nTPM: 28.3
2587 Male, age 74, left hemisphere 33.1
2087 Female, age 72, unknown 31.5
2664 Male, age 75, both hemispheres 30.4
1995 Male, age 72, unknown 29.7
2261 Male, age 18, unknown 29.6
1796 Male, age 53, unknown 27.8
1839 Male, age 51, unknown 27.6
1913 Female, age 42, unknown 26.9
1895 Male, age 76, right hemisphere 23.6
2668 Female, age 75, unknown 22.9
Ventral tegmental area
nTPM: 20.3
2218 Male, age 76, both hemispheres 24.5
2021 Male, age 53, unknown 23.1
1915 Female, age 42, unknown 21.8
1942 Male, age 51, unknown 20.0
2223 Female, age 72, unknown 16.4
2410 Female, age 72, unknown 16.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 26.1
Min nTPM: 8.7
Std nTPM: 3.5
Median nTPM: 13.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 26.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 23.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 23.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 21.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 21.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 21.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 20.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 19.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 19.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 19.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 19.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.9
FF:10158-103A5 76 years, female 60.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 77.0
Pig sample Sample description nTPM
Midbrain
nTPM: 64.0
Samples: 4

Max nTPM: 83.0
Min nTPM: 50.3
Sample A Female 69.7
Sample B Female 50.3
Sample C Male 83.0
Sample D Male 53.0
Periaqueductal gray
nTPM: 52.1
Samples: 3

Max nTPM: 55.7
Min nTPM: 50.2
Sample B Female 50.5
Sample C Male 55.7
Sample D Male 50.2
Substantia nigra
nTPM: 54.4
Samples: 4

Max nTPM: 58.0
Min nTPM: 49.0
Sample A Female 58.0
Sample B Female 55.6
Sample C Male 54.9
Sample D Male 49.0
Superior colliculi
nTPM: 77.1
Samples: 4

Max nTPM: 98.3
Min nTPM: 60.4
Sample A Female 71.6
Sample B Female 98.3
Sample C Male 77.9
Sample D Male 60.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.4
Samples: 4

Max nTPM: 47.6
Min nTPM: 38.1
Sample A Male 38.1
Sample B Male 45.1
Sample C Female 47.6
Sample D Female 46.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
70920003 Antisense, RP_050713_02_E05, Mouse strain C57BL/6J (56 days, male) 7.3
70785732 Antisense, RP_050706_02_D11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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