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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:291.2 nTPM
HPA:291.2 nTPM
GTEx:266.9 nTPM
FANTOM5:254.7 Scaled Tags Per Million
Pig:26.2 nTPM
Mouse:295.7 nTPM
Allen mouse:1.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 291.2
Sample id Sample description nTPM
Amygdala
nTPM: 291.2
2814 Male, age 76, right hemisphere 300.8
2514 Male, age 75, right hemisphere 292.6
2695 Female, age 67, right hemisphere 291.0
1987 Female, age 91, left hemisphere 286.8
2517 Female, age 94, left hemisphere 284.9
Basal amygdala
nTPM: 285.8
2609 Male, age 75, right hemisphere 292.1
1955 Male, age 76, both hemispheres 290.5
2243 Female, age 91, right hemisphere 289.6
2110 Male, age 80, left hemisphere 285.4
2685 Female, age 94, left hemisphere 284.4
2827 Female, age 67, right hemisphere 272.9
Central amygdala
nTPM: 287.0
1905 Male, age 76, both hemispheres 298.3
2826 Female, age 94, left hemisphere 290.0
2239 Male, age 80, left hemisphere 284.7
2515 Male, age 75, right hemisphere 281.4
2701 Female, age 91, right hemisphere 280.5
Corticomedial amygdala
nTPM: 289.6
2240 Male, age 76, both hemispheres 301.7
2242 Female, age 91, right hemisphere 292.8
2429 Female, age 94, left hemisphere 292.0
2428 Male, age 75, right hemisphere 288.9
2829 Male, age 80, left hemisphere 287.8
2535 Female, age 67, right hemisphere 274.5
Lateral amygdala
nTPM: 285.1
2534 Female, age 94, left hemisphere 295.9
1883 Male, age 76, both hemispheres 294.5
2516 Male, age 75, right hemisphere 293.8
2255 Female, age 91, right hemisphere 278.1
2256 Male, age 80, left hemisphere 274.6
2830 Female, age 67, right hemisphere 273.8
Stria terminalis, bed nucleus
nTPM: 289.5
1974 Female, age 91, both hemispheres 296.8
2486 Female, age 94, both hemispheres 287.0
2201 Male, age 74, unknown 284.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 266.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 266.9
Samples: 152

Max nTPM: 1059.7
Min nTPM: 126.8
Std nTPM: 108.6
Median nTPM: 238.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1059.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 680.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 616.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 595.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 555.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 551.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 497.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 432.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 404.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 386.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 384.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 383.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 380.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 378.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 377.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 369.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 368.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 346.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 342.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 340.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 334.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 330.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 322.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 319.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 317.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 315.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 313.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 312.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 311.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 311.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 310.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 307.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 304.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 303.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 303.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 299.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 290.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 284.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 284.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 283.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 283.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 278.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 276.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 274.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 274.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 272.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 271.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 270.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 269.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 269.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 268.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 268.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 268.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 266.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 266.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 265.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 265.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 262.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 258.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 257.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 257.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 256.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 255.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 254.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 252.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 252.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 249.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 249.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 246.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 246.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 245.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 242.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 241.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 241.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 239.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 238.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 238.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 237.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 236.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 236.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 236.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 236.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 235.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 234.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 233.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 233.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 232.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 231.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 229.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 228.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 225.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 224.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 223.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 223.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 223.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 222.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 222.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 222.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 221.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 221.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 221.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 220.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 219.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 219.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 217.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 217.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 217.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 215.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 215.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 214.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 213.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 213.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 213.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 212.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 212.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 211.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 210.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 209.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 208.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 206.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 205.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 205.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 205.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 204.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 203.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 201.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 201.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 199.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 198.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 197.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 197.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 192.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 188.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 187.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 187.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 184.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 182.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 182.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 180.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 176.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 174.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 173.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 173.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 171.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 169.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 163.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 163.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 157.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 156.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 149.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 138.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 126.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 254.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 254.7
FF:10151-102I7 76 years, female 254.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.2
Pig sample Sample description nTPM
Amygdala
nTPM: 26.3
Samples: 4

Max nTPM: 33.2
Min nTPM: 19.7
Sample A Female 33.2
Sample B Female 28.1
Sample C Male 24.0
Sample D Male 19.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 295.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 295.7
Samples: 4

Max nTPM: 325.2
Min nTPM: 279.5
Sample A Male 291.2
Sample B Male 286.8
Sample C Female 325.2
Sample D Female 279.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.0
124 Antisense, RP_Baylor_102641, Mouse strain C57BL/6J (56 days, male) 1.0
125 Antisense, RP_Baylor_102641, Mouse strain C57BL/6J (56 days, male) 0.0

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