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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:249.5 nTPM
GTEx:249.5 nTPM
FANTOM5:305.5 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:290.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 249.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 249.5
Samples: 105

Max nTPM: 375.5
Min nTPM: 166.7
Std nTPM: 44.2
Median nTPM:
162_1 79 years, female 375.5
490_1 67 years, female 371.0
491_1 89 years, female 361.9
413_1 59 years, female 336.0
142_1 61 years, female 329.1
414_1 84 years, female 327.0
415_1 77 years, female 326.1
501_1 88 years, male 323.0
17_1 71 years, male 316.5
466_1 57 years, female 316.0
153_1 70 years, female 310.5
375_1 74 years, female 306.6
265_1 87 years, male 302.9
315_1 62 years, female 302.1
81_1 67 years, male 293.8
139_1 64 years, female 291.3
149_1 88 years, male 290.7
396_1 62 years, male 290.3
126_1 63 years, male 289.0
4_1 88 years, female 287.6
35_1 74 years, female 286.5
229_1 69 years, female 282.8
217_1 76 years, male 279.1
499_1 55 years, female 279.0
246_1 77 years, male 277.1
120_1 70 years, female 276.2
313_1 79 years, female 275.1
18_1 88 years, male 273.1
379_1 60 years, male 272.9
41_1 94 years, female 270.5
32_1 67 years, male 266.9
495_1 57 years, female 266.9
324_1 76 years, male 266.6
2_1 77 years, female 264.4
89_1 63 years, male 264.3
145_1 84 years, male 263.8
117_1 61 years, male 263.4
43_1 64 years, female 262.7
137_1 83 years, male 261.7
254_1 77 years, female 260.3
119_1 70 years, female 259.7
468_1 89 years, male 259.2
6_1 73 years, female 257.5
115_1 83 years, male 257.4
9_1 66 years, female 257.3
389_1 86 years, female 257.1
109_1 81 years, female 256.6
447_1 81 years, male 256.1
404_1 82 years, female 254.1
386_1 76 years, male 250.4
376_1 75 years, female 249.6
384_1 83 years, male 247.2
237_1 82 years, male 245.7
377_1 82 years, female 243.9
288_1 66 years, female 243.5
518_1 75 years, female 242.6
189_1 76 years, male 241.2
425_1 59 years, female 240.7
99_1 64 years, male 239.9
42_1 85 years, male 239.1
452_1 88 years, female 238.2
347_1 72 years, male 236.3
394_1 75 years, female 236.3
243_1 75 years, male 235.5
335_1 73 years, female 234.8
480_1 63 years, male 232.6
322_1 76 years, male 231.9
266_1 85 years, male 231.6
354_1 81 years, female 231.6
316_1 62 years, male 231.4
308_1 70 years, female 229.0
307_1 66 years, female 228.3
526_1 61 years, male 227.9
321_1 62 years, female 226.3
319_1 81 years, male 224.9
350_1 84 years, female 220.4
405_1 91 years, male 219.3
311_1 78 years, male 219.2
349_1 83 years, male 216.1
348_1 84 years, male 215.2
286_1 68 years, female 213.3
264_1 73 years, female 212.7
314_1 67 years, male 210.4
406_1 79 years, male 209.8
506_1 65 years, male 207.5
503_1 68 years, male 207.0
352_1 62 years, male 206.2
355_1 70 years, female 205.2
517_1 88 years, male 203.5
177_1 74 years, male 199.5
218_1 71 years, female 198.9
173_1 67 years, male 197.6
172_1 72 years, female 196.3
353_1 82 years, female 193.8
351_1 91 years, male 192.2
295_1 61 years, female 191.5
251_1 78 years, male 191.0
318_1 68 years, male 190.9
163_1 78 years, male 190.4
320_1 89 years, female 189.5
356_1 87 years, female 180.5
291_1 76 years, male 178.5
293_1 68 years, female 174.1
292_1 71 years, male 167.5
317_1 60 years, male 166.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 305.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 305.5
FF:10030-101E3 24-65 years, mixed 305.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 17.7
Pig sample Sample description nTPM
Retina
nTPM: 17.7
Samples: 4

Max nTPM: 19.5
Min nTPM: 15.7
Sample A Female 15.7
Sample B Female 19.5
Sample C Male 18.2
Sample D Male 17.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 290.1
Mouse sample Sample description nTPM
Retina
nTPM: 290.1
Samples: 4

Max nTPM: 349.3
Min nTPM: 246.0
Sample A Male 311.5
Sample B Male 246.0
Sample C Female 349.3
Sample D Female 253.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.