BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:8.6 nTPM
HPA:8.6 nTPM
GTEx:7.1 nTPM
FANTOM5:6.9 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:6.7 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA006144
Glial cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.2
2481 Female, age 94, left hemisphere 8.1
1854 Male, age 80, left hemisphere 7.6
2288 Male, age 75, left hemisphere 7.6
2289 Male, age 61, right hemisphere 7.3
1857 Female, age 85, left hemisphere 7.1
1781 Male, age 74, unknown 6.8
2846 Female, age 79, unknown 6.7
2290 Female, age 72, unknown 6.5
Claustrum
nTPM: 7.9
2491 Male, age 75, both hemispheres 8.5
2568 Male, age 61, both hemispheres 8.5
2392 Female, age 94, both hemispheres 8.3
2292 Female, age 85, both hemispheres 8.1
2284 Female, age 91, both hemispheres 8.0
1956 Male, age 74, unknown 7.8
2645 Female, age 72, unknown 7.6
2196 Female, age 79, unknown 7.2
2198 Male, age 80, both hemispheres 7.0
Globus pallidus, externus
nTPM: 8.6
2567 Female, age 72, unknown 9.7
1996 Male, age 80, right hemisphere 8.7
2646 Male, age 61, right hemisphere 8.6
2395 Male, age 75, both hemispheres 8.0
2772 Female, age 79, unknown 7.8
Globus pallidus, internus
nTPM: 8.4
2778 Female, age 91, both hemispheres 9.4
2037 Male, age 80, right hemisphere 9.2
2566 Female, age 72, unknown 8.9
2111 Female, age 85, right hemisphere 8.4
2483 Female, age 94, right hemisphere 7.9
1818 Male, age 74, unknown 7.7
2287 Male, age 75, right hemisphere 7.5
Nucleus accumbens
nTPM: 7.8
2824 Male, age 61, right hemisphere 10.2
2391 Female, age 94, left hemisphere 8.0
2286 Male, age 75, left hemisphere 7.7
2732 Male, age 80, right hemisphere 7.7
1856 Female, age 91, right hemisphere 7.4
1806 Female, age 85, left hemisphere 7.2
2698 Female, age 72, unknown 7.2
1783 Male, age 74, unknown 6.9
Nucleus basalis of Meynert
nTPM: 7.5
2569 Male, age 61, both hemispheres 7.8
2484 Female, age 94, left hemisphere 7.6
2393 Male, age 80, right hemisphere 7.5
2821 Male, age 75, both hemispheres 7.1
Nucleus of the diagonal band
nTPM: 7.2
2029 Male, age 61, right hemisphere 8.1
1979 Male, age 74, unknown 7.7
2195 Female, age 85, both hemispheres 7.1
2775 Male, age 80, right hemisphere 6.7
1812 Female, age 91, both hemispheres 6.3
Olfactory tubercle
nTPM: 7.7
2487 Female, age 94, left hemisphere 8.4
1998 Female, age 91, both hemispheres 8.2
2856 Male, age 75, right hemisphere 7.4
1846 Male, age 80, right hemisphere 6.9
Putamen
nTPM: 7.9
1838 Male, age 80, right hemisphere 8.7
2466 Female, age 79, unknown 8.2
1829 Male, age 74, unknown 7.8
1937 Female, age 91, right hemisphere 7.8
2482 Female, age 94, left hemisphere 7.7
2489 Female, age 72, unknown 7.7
2647 Male, age 75, left hemisphere 7.2
Septal nuclei
nTPM: 7.4
2059 Female, age 85, both hemispheres 8.5
2394 Male, age 61, left hemisphere 8.5
2199 Male, age 80, right hemisphere 7.7
2009 Female, age 91, both hemispheres 7.1
2629 Female, age 94, right hemisphere 7.0
1960 Male, age 74, unknown 6.6
2031 Female, age 72, unknown 6.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.7
Samples: 246

Max nTPM: 14.1
Min nTPM: 3.2
Std nTPM: 1.5
Median nTPM: 6.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 14.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 10.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 10.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 10.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 10.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 10.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 9.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 9.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 9.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 9.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 9.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.9
Samples: 246

Max nTPM: 14.2
Min nTPM: 3.2
Std nTPM: 1.8
Median nTPM: 6.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 14.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 12.5
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 12.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 12.2
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 12.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 12.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 11.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 11.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 10.9
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 10.8
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 10.7
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Brain - Putamen (basal ganglia)
Average nTPM: 7.1
Samples: 205

Max nTPM: 14.1
Min nTPM: 3.5
Std nTPM: 1.6
Median nTPM: 6.8
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 14.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 12.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 11.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 11.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 10.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 10.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 10.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 10.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 10.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 10.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 10.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.2
FF:10164-103B2 76 years, female 4.2
Globus pallidus
Scaled Tags Per Million: 4.4
FF:10161-103A8 76 years, female 5.7
FF:10175-103C4 60 years, female 3.1
Nucleus accumbens
Scaled Tags Per Million: 6.9
FF:10037-101F1 23-56 years, mixed 6.9
Putamen
Scaled Tags Per Million: 3.5
FF:10176-103C5 60 years, female 3.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Caudate
nTPM: 5.1
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 5.4
Sample C Male 5.1
Sample D Male 5.1
Putamen
nTPM: 5.1
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 4.7
Sample C Male 4.7
Sample D Male 6.5
Septum
nTPM: 4.6
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 4.6
Sample C Male 4.6
Sample D Male 5.1
Ventral pallidum
nTPM: 5.2
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 5.6
Sample C Male 5.3
Sample D Male 5.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.3
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.8
Sample A Male 6.1
Sample B Male 6.9
Sample C Female 5.8
Sample D Female 6.2
Septum
nTPM: 6.7
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.6
Sample A Male 6.6
Sample B Male 7.4
Sample C Female 5.6
Sample D Female 7.2
Ventral forebrain
nTPM: 6.7
Samples: 4

Max nTPM: 7.1
Min nTPM: 6.2
Sample A Male 7.1
Sample B Male 6.5
Sample C Female 6.2
Sample D Female 6.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
69407158 Antisense, RP_050414_01_A04, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
69407158 Antisense, RP_050414_01_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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