MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:70.2 nTPM
HPA:70.2 nTPM
GTEx:44.2 nTPM
FANTOM5:7.5 Scaled Tags Per Million
Pig:16.2 nTPM
Mouse:35.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.7
2586 Male, age 75, left hemisphere 77.9
2828 Female, age 72, unknown 70.7
1827 Male, age 72, unknown 69.1
2666 Male, age 74, left hemisphere 60.0
2019 Male, age 18, unknown 58.8
1870 Female, age 42, unknown 52.8
2411 Female, age 72, unknown 51.0
1830 Male, age 51, unknown 49.2
1833 Male, age 53, unknown 49.2
2219 Male, age 76, both hemispheres 48.8
Dorsal raphe nucleus
nTPM: 53.3
2298 Female, age 72, unknown 59.4
2047 Male, age 72, unknown 54.3
2016 Female, age 72, unknown 52.8
2750 Male, age 76, both hemispheres 51.1
1828 Male, age 53, unknown 48.9
Inferior colliculus
nTPM: 54.9
1890 Male, age 53, unknown 59.8
2097 Female, age 72, unknown 59.5
1848 Female, age 42, unknown 50.8
2849 Male, age 72, unknown 49.6
Median raphe nucleus
nTPM: 52.3
2220 Male, age 76, midline 52.3
Pedunculopontine tegmental nucleus
nTPM: 52.2
2338 Male, age 61, both hemispheres 53.3
1921 Female, age 85, both hemispheres 52.0
2334 Male, age 80, both hemispheres 51.4
Periaquaductal grey, anterior
nTPM: 62.7
1795 Male, age 51, unknown 73.3
2502 Female, age 75, unknown 65.2
1947 Male, age 18, unknown 49.7
Periaquaductal grey, dorsal
nTPM: 59.2
1831 Male, age 72, unknown 61.8
1840 Male, age 53, unknown 61.1
2850 Male, age 76, both hemispheres 60.9
2464 Female, age 72, unknown 52.8
Periaquaductal grey, lateral
nTPM: 61.7
2053 Male, age 18, unknown 66.1
2140 Male, age 76, both hemispheres 64.7
2272 Male, age 74, both hemispheres 54.4
Pretectal area
nTPM: 70.2
1816 Male, age 51, unknown 102.3
1944 Female, age 72, unknown 91.7
1817 Female, age 42, unknown 77.0
1815 Male, age 53, unknown 76.9
2007 Male, age 72, unknown 76.7
2407 Male, age 75, both hemispheres 63.7
2825 Male, age 18, unknown 62.9
2667 Female, age 75, unknown 59.6
2224 Female, age 72, unknown 56.2
2316 Male, age 76, right hemisphere 54.5
2273 Male, age 74, both hemispheres 50.5
Red nucleus
nTPM: 52.7
2584 Male, age 75, left hemisphere 65.6
2785 Male, age 18, unknown 58.7
2503 Female, age 72, unknown 53.2
1954 Female, age 42, unknown 52.9
2725 Female, age 75, unknown 52.9
2588 Male, age 74, left hemisphere 52.7
1904 Male, age 53, unknown 52.6
1821 Female, age 72, unknown 49.7
1865 Male, age 51, unknown 49.4
2769 Male, age 72, unknown 49.0
2823 Male, age 76, right hemisphere 48.5
2227 Male, age 72, unknown 47.7
Substantia nigra
nTPM: 58.1
2583 Male, age 75, right hemisphere 70.3
1889 Female, age 72, unknown 65.1
2665 Male, age 74, both hemispheres 62.6
2590 Female, age 75, unknown 61.0
1916 Female, age 42, unknown 57.8
1851 Male, age 51, unknown 56.5
2241 Male, age 72, unknown 53.4
2409 Female, age 72, unknown 52.8
2699 Male, age 18, unknown 50.8
1941 Male, age 53, unknown 50.6
Superior colliculus
nTPM: 65.3
2087 Female, age 72, unknown 85.0
2261 Male, age 18, unknown 80.9
2664 Male, age 75, both hemispheres 76.0
1796 Male, age 53, unknown 66.8
1913 Female, age 42, unknown 66.4
2668 Female, age 75, unknown 64.3
1995 Male, age 72, unknown 63.6
2587 Male, age 74, left hemisphere 51.7
1839 Male, age 51, unknown 50.7
1895 Male, age 76, right hemisphere 47.5
Ventral tegmental area
nTPM: 55.1
2021 Male, age 53, unknown 60.6
2218 Male, age 76, both hemispheres 57.0
2410 Female, age 72, unknown 56.8
1915 Female, age 42, unknown 54.0
1942 Male, age 51, unknown 52.3
2223 Female, age 72, unknown 49.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.2
Samples: 139

Max nTPM: 66.4
Min nTPM: 29.7
Std nTPM: 7.1
Median nTPM: 43.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 66.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 61.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 60.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 59.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 59.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 58.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 56.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 55.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 55.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 55.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 55.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.5
FF:10158-103A5 76 years, female 7.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.2
Pig sample Sample description nTPM
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 24.8
Min nTPM: 10.9
Sample A Female 10.9
Sample B Female 12.4
Sample C Male 24.8
Sample D Male 15.8
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 17.6
Min nTPM: 10.8
Sample B Female 10.8
Sample C Male 17.6
Sample D Male 11.1
Substantia nigra
nTPM: 16.2
Samples: 4

Max nTPM: 22.9
Min nTPM: 6.7
Sample A Female 21.8
Sample B Female 13.5
Sample C Male 22.9
Sample D Male 6.7
Superior colliculi
nTPM: 15.4
Samples: 4

Max nTPM: 16.7
Min nTPM: 14.6
Sample A Female 14.9
Sample B Female 16.7
Sample C Male 15.3
Sample D Male 14.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 38.6
Min nTPM: 32.0
Sample A Male 32.0
Sample B Male 36.4
Sample C Female 38.6
Sample D Female 36.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70928373 Antisense, RP_050725_02_D10, Mouse strain C57BL/6J (56 days, male) 0.3
68157389 Antisense, RP_041116_02_C12, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.