HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:39.4 nTPM
HPA:39.4 nTPM
GTEx:30.8 nTPM
FANTOM5:156.0 Scaled Tags Per Million
Pig:80.1 nTPM
Mouse:274.3 nTPM
Allen mouse:14.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023943
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.4
Sample id Sample description nTPM
Hippocampus
nTPM: 24.2
1898 Male, age 80, left hemisphere 36.6
1855 Male, age 76, left hemisphere 24.2
2621 Female, age 67, right hemisphere 22.8
2148 Female, age 91, left hemisphere 21.4
2529 Female, age 94, left hemisphere 20.5
1911 Female, age 85, right hemisphere 19.6
Dentate gyrus
nTPM: 24.9
1927 Female, age 91, both hemispheres 36.7
2010 Male, age 76, both hemispheres 29.3
2246 Female, age 85, both hemispheres 24.1
2528 Male, age 74, both hemispheres 22.6
2530 Female, age 94, left hemisphere 18.6
2531 Female, age 67, both hemispheres 18.1
Entorhinal gyrus
nTPM: 24.1
2764 Male, age 80, right hemisphere 32.9
1938 Female, age 85, left hemisphere 30.0
1787 Male, age 76, left hemisphere 25.3
2613 Female, age 94, left hemisphere 20.8
2117 Female, age 91, right hemisphere 17.9
2686 Male, age 75, right hemisphere 17.7
Hippocampus, CA1
nTPM: 29.8
2749 Male, age 80, left hemisphere 49.5
1873 Female, age 85, both hemispheres 30.5
2045 Male, age 76, both hemispheres 23.3
2527 Male, age 74, both hemispheres 23.3
2082 Female, age 91, right hemisphere 22.4
Hippocampus, CA2
nTPM: 26.4
1892 Male, age 76, both hemispheres 38.3
1963 Male, age 80, left hemisphere 33.2
1940 Female, age 85, left hemisphere 24.4
2113 Female, age 91, right hemisphere 22.1
2249 Male, age 74, both hemispheres 20.8
2437 Female, age 94, left hemisphere 19.4
Hippocampus, CA3
nTPM: 25.9
2137 Male, age 80, left hemisphere 37.3
1867 Male, age 76, both hemispheres 29.6
2620 Female, age 94, left hemisphere 25.3
2436 Male, age 74, both hemispheres 23.1
1891 Female, age 85, both hemispheres 22.7
2861 Female, age 67, both hemispheres 17.4
Parahippocampal cortex
nTPM: 28.7
1850 Male, age 80, both hemispheres 43.9
1933 Female, age 85, both hemispheres 31.6
2250 Female, age 67, right hemisphere 31.3
1990 Female, age 91, right hemisphere 30.7
2245 Female, age 91, both hemispheres 30.6
2532 Female, age 72, left hemisphere 28.0
2693 Female, age 94, both hemispheres 27.0
2018 Male, age 76, both hemispheres 25.5
2622 Female, age 67, right hemisphere 19.6
2692 Male, age 74, both hemispheres 19.2
Perirhinal gyrus
nTPM: 39.4
1847 Female, age 91, left hemisphere 47.6
1794 Male, age 80, right hemisphere 43.8
1841 Female, age 85, right hemisphere 38.6
2521 Female, age 94, right hemisphere 34.0
2848 Male, age 76, right hemisphere 33.2
Subiculum
nTPM: 21.7
1977 Female, age 85, both hemispheres 27.0
1901 Male, age 80, both hemispheres 25.9
2438 Female, age 94, left hemisphere 22.5
2619 Male, age 74, both hemispheres 19.8
2042 Male, age 76, both hemispheres 18.0
2729 Female, age 91, right hemisphere 17.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.8
Samples: 197

Max nTPM: 82.1
Min nTPM: 9.8
Std nTPM: 13.7
Median nTPM: 27.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 82.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 70.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 64.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 63.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 63.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 63.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 62.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 61.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 59.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 58.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 58.7
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 156.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 156.0
FF:10169-103B7 60 years, female 219.7
FF:10153-102I9 76 years, female 92.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 80.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 80.1
Samples: 4

Max nTPM: 103.1
Min nTPM: 61.9
Sample A Female 103.1
Sample B Female 80.2
Sample C Male 75.1
Sample D Male 61.9
Entorhinal cortex
nTPM: 71.0
Samples: 4

Max nTPM: 83.7
Min nTPM: 63.9
Sample A Female 83.7
Sample B Female 68.9
Sample C Male 67.4
Sample D Male 63.9
Subiculum
nTPM: 71.0
Samples: 4

Max nTPM: 85.1
Min nTPM: 61.6
Sample A Female 85.1
Sample B Female 61.6
Sample C Male 68.3
Sample D Male 68.8
Ventral hippocampus
nTPM: 76.3
Samples: 4

Max nTPM: 91.7
Min nTPM: 55.8
Sample A Female 91.7
Sample B Female 55.8
Sample C Male 79.7
Sample D Male 78.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 274.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 272.4
Samples: 4

Max nTPM: 297.6
Min nTPM: 242.2
Sample A Male 242.2
Sample B Male 297.6
Sample C Female 268.4
Sample D Female 281.3
Hippocampal formation
nTPM: 274.3
Samples: 4

Max nTPM: 302.7
Min nTPM: 253.0
Sample A Male 302.7
Sample B Male 269.0
Sample C Female 272.5
Sample D Female 253.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.5
70539160 Antisense, RP_050324_01_D07, Mouse strain C57BL/6J (56 days, male) 28.9
71456149 Antisense, RP_050719_04_E12, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.