MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:7.4 nTPM
HPA:7.4 nTPM
GTEx:20.1 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:38.6 nTPM
Mouse:44.5 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.4
2019 Male, age 18, unknown 7.3
2586 Male, age 75, left hemisphere 7.1
1870 Female, age 42, unknown 6.6
2411 Female, age 72, unknown 6.6
1830 Male, age 51, unknown 6.4
1833 Male, age 53, unknown 6.2
2828 Female, age 72, unknown 6.1
1827 Male, age 72, unknown 6.0
2219 Male, age 76, both hemispheres 6.0
2666 Male, age 74, left hemisphere 5.8
Dorsal raphe nucleus
nTPM: 6.8
2750 Male, age 76, both hemispheres 7.0
2047 Male, age 72, unknown 6.9
2298 Female, age 72, unknown 6.8
1828 Male, age 53, unknown 6.6
2016 Female, age 72, unknown 6.6
Inferior colliculus
nTPM: 6.3
2097 Female, age 72, unknown 6.5
1848 Female, age 42, unknown 6.3
1890 Male, age 53, unknown 6.3
2849 Male, age 72, unknown 6.0
Median raphe nucleus
nTPM: 7.4
2220 Male, age 76, midline 7.4
Pedunculopontine tegmental nucleus
nTPM: 6.7
2334 Male, age 80, both hemispheres 6.8
1921 Female, age 85, both hemispheres 6.7
2338 Male, age 61, both hemispheres 6.6
Periaquaductal grey, anterior
nTPM: 6.6
2502 Female, age 75, unknown 7.4
1795 Male, age 51, unknown 6.4
1947 Male, age 18, unknown 6.2
Periaquaductal grey, dorsal
nTPM: 6.8
1840 Male, age 53, unknown 6.9
2850 Male, age 76, both hemispheres 6.9
1831 Male, age 72, unknown 6.7
2464 Female, age 72, unknown 6.6
Periaquaductal grey, lateral
nTPM: 6.1
2053 Male, age 18, unknown 6.5
2272 Male, age 74, both hemispheres 6.1
2140 Male, age 76, both hemispheres 5.7
Pretectal area
nTPM: 6.7
2007 Male, age 72, unknown 7.4
1815 Male, age 53, unknown 7.3
1816 Male, age 51, unknown 7.0
1817 Female, age 42, unknown 6.9
2273 Male, age 74, both hemispheres 6.9
1944 Female, age 72, unknown 6.8
2224 Female, age 72, unknown 6.8
2407 Male, age 75, both hemispheres 6.8
2667 Female, age 75, unknown 6.4
2316 Male, age 76, right hemisphere 5.9
2825 Male, age 18, unknown 5.9
Red nucleus
nTPM: 6.5
1821 Female, age 72, unknown 7.0
2503 Female, age 72, unknown 7.0
2785 Male, age 18, unknown 7.0
1865 Male, age 51, unknown 6.9
1954 Female, age 42, unknown 6.8
2227 Male, age 72, unknown 6.5
1904 Male, age 53, unknown 6.4
2823 Male, age 76, right hemisphere 6.3
2588 Male, age 74, left hemisphere 6.2
2769 Male, age 72, unknown 6.1
2584 Male, age 75, left hemisphere 5.9
2725 Female, age 75, unknown 5.7
Substantia nigra
nTPM: 6.4
1889 Female, age 72, unknown 7.3
2409 Female, age 72, unknown 6.8
1941 Male, age 53, unknown 6.7
2583 Male, age 75, right hemisphere 6.7
2590 Female, age 75, unknown 6.4
2241 Male, age 72, unknown 6.2
1851 Male, age 51, unknown 6.1
2699 Male, age 18, unknown 6.1
2665 Male, age 74, both hemispheres 6.0
1916 Female, age 42, unknown 5.7
Superior colliculus
nTPM: 6.6
2668 Female, age 75, unknown 7.2
1995 Male, age 72, unknown 7.1
2664 Male, age 75, both hemispheres 7.1
1913 Female, age 42, unknown 6.9
2587 Male, age 74, left hemisphere 6.6
2087 Female, age 72, unknown 6.5
2261 Male, age 18, unknown 6.4
1839 Male, age 51, unknown 6.3
1796 Male, age 53, unknown 5.9
1895 Male, age 76, right hemisphere 5.9
Ventral tegmental area
nTPM: 6.5
2410 Female, age 72, unknown 7.0
2223 Female, age 72, unknown 6.9
1942 Male, age 51, unknown 6.6
2021 Male, age 53, unknown 6.6
1915 Female, age 42, unknown 6.1
2218 Male, age 76, both hemispheres 5.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.1
Samples: 139

Max nTPM: 37.8
Min nTPM: 11.2
Std nTPM: 4.7
Median nTPM: 19.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 37.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 32.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 31.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 30.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 30.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 29.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 29.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 28.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 28.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 28.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 27.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.8
FF:10158-103A5 76 years, female 57.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.6
Pig sample Sample description nTPM
Midbrain
nTPM: 38.6
Samples: 4

Max nTPM: 48.6
Min nTPM: 33.4
Sample A Female 37.8
Sample B Female 33.4
Sample C Male 48.6
Sample D Male 34.5
Periaqueductal gray
nTPM: 26.3
Samples: 3

Max nTPM: 26.6
Min nTPM: 26.0
Sample B Female 26.4
Sample C Male 26.6
Sample D Male 26.0
Substantia nigra
nTPM: 32.0
Samples: 4

Max nTPM: 40.7
Min nTPM: 28.3
Sample A Female 40.7
Sample B Female 28.3
Sample C Male 30.7
Sample D Male 28.3
Superior colliculi
nTPM: 35.4
Samples: 4

Max nTPM: 43.9
Min nTPM: 26.1
Sample A Female 37.6
Sample B Female 26.1
Sample C Male 43.9
Sample D Male 33.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.5
Samples: 4

Max nTPM: 47.1
Min nTPM: 41.5
Sample A Male 41.5
Sample B Male 42.6
Sample C Female 47.1
Sample D Female 46.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68637479 Antisense, RP_050126_01_A04, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.