MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA:9.7 nTPM
GTEx:9.5 nTPM
FANTOM5:19.2 Scaled Tags Per Million
Mouse:13.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.3
1830 Male, age 51, unknown 9.3
2411 Female, age 72, unknown 9.2
2666 Male, age 74, left hemisphere 8.8
1833 Male, age 53, unknown 8.7
2219 Male, age 76, both hemispheres 8.5
2586 Male, age 75, left hemisphere 8.4
1827 Male, age 72, unknown 8.3
1870 Female, age 42, unknown 7.8
2019 Male, age 18, unknown 6.8
2828 Female, age 72, unknown 6.7
Dorsal raphe nucleus
nTPM: 7.7
2298 Female, age 72, unknown 8.2
2750 Male, age 76, both hemispheres 8.0
1828 Male, age 53, unknown 7.8
2016 Female, age 72, unknown 7.3
2047 Male, age 72, unknown 7.2
Inferior colliculus
nTPM: 8.1
2097 Female, age 72, unknown 9.0
1848 Female, age 42, unknown 8.9
2849 Male, age 72, unknown 7.8
1890 Male, age 53, unknown 6.8
Median raphe nucleus
nTPM: 9.7
2220 Male, age 76, midline 9.7
Pedunculopontine tegmental nucleus
nTPM: 7.8
1921 Female, age 85, both hemispheres 7.9
2334 Male, age 80, both hemispheres 7.9
2338 Male, age 61, both hemispheres 7.8
Periaquaductal grey, anterior
nTPM: 7.9
1947 Male, age 18, unknown 9.6
1795 Male, age 51, unknown 7.1
2502 Female, age 75, unknown 7.1
Periaquaductal grey, dorsal
nTPM: 8.7
2850 Male, age 76, both hemispheres 9.8
1831 Male, age 72, unknown 9.7
1840 Male, age 53, unknown 8.5
2464 Female, age 72, unknown 6.6
Periaquaductal grey, lateral
nTPM: 8.1
2140 Male, age 76, both hemispheres 9.0
2053 Male, age 18, unknown 7.9
2272 Male, age 74, both hemispheres 7.3
Pretectal area
nTPM: 8.3
2407 Male, age 75, both hemispheres 9.4
1944 Female, age 72, unknown 8.7
1815 Male, age 53, unknown 8.4
1816 Male, age 51, unknown 8.4
2316 Male, age 76, right hemisphere 8.4
2667 Female, age 75, unknown 8.3
1817 Female, age 42, unknown 8.1
2825 Male, age 18, unknown 8.0
2007 Male, age 72, unknown 7.8
2273 Male, age 74, both hemispheres 7.7
2224 Female, age 72, unknown 7.6
Red nucleus
nTPM: 8.3
2823 Male, age 76, right hemisphere 10.9
2725 Female, age 75, unknown 9.8
1904 Male, age 53, unknown 9.0
1954 Female, age 42, unknown 8.6
2588 Male, age 74, left hemisphere 8.6
2584 Male, age 75, left hemisphere 8.4
2769 Male, age 72, unknown 8.0
1821 Female, age 72, unknown 7.9
1865 Male, age 51, unknown 7.8
2227 Male, age 72, unknown 7.4
2785 Male, age 18, unknown 7.3
2503 Female, age 72, unknown 6.4
Substantia nigra
nTPM: 7.8
2699 Male, age 18, unknown 9.3
1941 Male, age 53, unknown 9.1
2241 Male, age 72, unknown 8.4
1851 Male, age 51, unknown 8.1
1916 Female, age 42, unknown 8.1
2665 Male, age 74, both hemispheres 7.8
1889 Female, age 72, unknown 7.7
2590 Female, age 75, unknown 7.3
2583 Male, age 75, right hemisphere 6.8
2409 Female, age 72, unknown 5.9
Superior colliculus
nTPM: 7.8
1895 Male, age 76, right hemisphere 8.8
1913 Female, age 42, unknown 8.6
1995 Male, age 72, unknown 8.4
2587 Male, age 74, left hemisphere 7.9
2087 Female, age 72, unknown 7.7
2668 Female, age 75, unknown 7.7
2261 Male, age 18, unknown 7.6
1839 Male, age 51, unknown 7.4
2664 Male, age 75, both hemispheres 6.9
1796 Male, age 53, unknown 6.7
Ventral tegmental area
nTPM: 7.3
2218 Male, age 76, both hemispheres 8.8
2223 Female, age 72, unknown 7.7
1942 Male, age 51, unknown 7.4
2021 Male, age 53, unknown 7.3
2410 Female, age 72, unknown 6.6
1915 Female, age 42, unknown 6.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 19.5
Min nTPM: 5.4
Std nTPM: 2.1
Median nTPM: 9.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 19.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 15.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 14.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 13.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 13.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 13.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 13.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 12.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 12.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 12.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.2
FF:10158-103A5 76 years, female 19.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 14.7
Min nTPM: 12.7
Sample A Male 12.7
Sample B Male 14.7
Sample C Female 13.1
Sample D Female 13.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71724475 Antisense, RP_050927_03_F12, Mouse strain C57BL/6J (56 days, male) 0.0

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