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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:183.2 nTPM
HPA:183.2 nTPM
GTEx:183.5 nTPM
FANTOM5:61.0 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 183.2
Sample id Sample description nTPM
Amygdala
nTPM: 183.1
2695 Female, age 67, right hemisphere 195.8
1987 Female, age 91, left hemisphere 181.3
2517 Female, age 94, left hemisphere 180.0
2814 Male, age 76, right hemisphere 179.8
2514 Male, age 75, right hemisphere 178.6
Basal amygdala
nTPM: 178.1
2609 Male, age 75, right hemisphere 193.0
2243 Female, age 91, right hemisphere 179.0
1955 Male, age 76, both hemispheres 176.9
2110 Male, age 80, left hemisphere 175.0
2685 Female, age 94, left hemisphere 172.8
2827 Female, age 67, right hemisphere 172.1
Central amygdala
nTPM: 183.2
2515 Male, age 75, right hemisphere 192.7
2826 Female, age 94, left hemisphere 190.6
1905 Male, age 76, both hemispheres 180.6
2239 Male, age 80, left hemisphere 177.7
2701 Female, age 91, right hemisphere 174.6
Corticomedial amygdala
nTPM: 177.9
2428 Male, age 75, right hemisphere 190.8
2829 Male, age 80, left hemisphere 178.6
2429 Female, age 94, left hemisphere 177.4
2242 Female, age 91, right hemisphere 176.5
2240 Male, age 76, both hemispheres 175.3
2535 Female, age 67, right hemisphere 168.8
Lateral amygdala
nTPM: 179.5
2516 Male, age 75, right hemisphere 187.6
2830 Female, age 67, right hemisphere 183.9
2256 Male, age 80, left hemisphere 181.8
2255 Female, age 91, right hemisphere 176.2
2534 Female, age 94, left hemisphere 174.2
1883 Male, age 76, both hemispheres 173.5
Stria terminalis, bed nucleus
nTPM: 159.7
2201 Male, age 74, unknown 166.7
2486 Female, age 94, both hemispheres 156.3
1974 Female, age 91, both hemispheres 156.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 183.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 183.5
Samples: 152

Max nTPM: 655.0
Min nTPM: 71.4
Std nTPM: 77.1
Median nTPM: 166.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 655.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 546.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 371.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 344.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 320.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 312.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 309.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 308.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 308.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 302.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 301.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 277.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 271.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 271.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 267.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 265.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 264.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 261.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 256.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 256.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 255.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 255.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 253.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 252.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 249.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 248.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 245.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 245.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 239.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 236.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 235.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 230.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 227.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 224.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 224.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 223.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 219.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 217.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 214.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 211.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 211.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 211.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 211.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 210.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 208.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 206.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 201.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 200.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 200.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 199.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 197.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 197.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 195.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 193.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 191.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 191.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 191.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 189.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 189.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 187.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 186.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 183.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 180.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 179.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 179.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 177.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 176.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 174.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 172.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 171.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 170.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 169.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 169.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 168.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 167.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 167.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 166.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 164.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 164.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 159.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 157.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 157.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 156.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 155.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 155.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 154.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 154.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 153.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 153.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 152.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 152.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 152.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 151.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 151.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 150.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 150.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 149.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 148.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 146.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 146.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 143.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 143.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 140.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 140.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 139.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 139.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 138.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 138.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 136.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 135.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 135.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 135.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 135.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 134.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 134.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 133.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 133.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 133.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 132.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 132.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 131.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 129.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 127.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 126.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 126.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 125.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 124.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 123.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 122.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 122.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 119.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 118.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 118.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 118.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 115.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 111.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 109.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 109.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 104.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 104.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 104.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 103.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 103.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 102.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 96.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 92.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 92.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 89.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 85.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 79.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 75.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 71.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 61.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 61.0
FF:10151-102I7 76 years, female 61.0

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