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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:192.8 nTPM
HPA:192.8 nTPM
GTEx:121.2 nTPM
FANTOM5:64.7 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 192.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 186.1
2048 Male, age 55, midline 200.2
1981 Female, age 72, midline 193.7
2565 Male, age 75, midline 181.6
2816 Male, age 47, midline 177.9
2194 Female, age 79, both hemispheres 177.3
Cervical spinal cord, dorsal horn
nTPM: 181.0
2173 Female, age 72, unknown 197.6
2721 Male, age 90, both hemispheres 188.8
1877 Male, age 55, unknown 188.0
2069 Male, age 47, both hemispheres 176.7
2296 Male, age 66, both hemispheres 172.5
2297 Male, age 75, both hemispheres 162.6
Cervical spinal cord, ventral horn
nTPM: 192.8
2098 Female, age 72, unknown 220.9
2809 Male, age 90, both hemispheres 217.8
2295 Male, age 66, both hemispheres 190.3
2480 Male, age 75, both hemispheres 182.1
2068 Male, age 55, unknown 178.9
2820 Female, age 79, both hemispheres 166.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 121.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 121.2
Samples: 159

Max nTPM: 277.2
Min nTPM: 46.8
Std nTPM: 40.6
Median nTPM: 114.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 277.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 271.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 239.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 221.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 219.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 212.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 210.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 199.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 198.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 198.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 194.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 186.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 185.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 182.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 177.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 169.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 168.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 167.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 163.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 160.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 160.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 159.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 158.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 158.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 157.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 156.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 156.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 155.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 155.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 152.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 151.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 151.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 148.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 148.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 146.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 145.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 144.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 142.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 141.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 139.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 138.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 138.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 136.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 135.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 135.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 135.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 135.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 134.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 133.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 133.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 131.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 131.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 131.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 130.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 129.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 129.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 129.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 128.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 128.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 128.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 126.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 126.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 126.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 126.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 126.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 125.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 124.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 123.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 123.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 122.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 121.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 121.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 120.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 119.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 118.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 117.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 116.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 115.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 115.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 114.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 114.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 113.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 113.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 112.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 110.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 110.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 110.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 109.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 108.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 108.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 107.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 107.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 107.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 106.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 106.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 106.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 106.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 105.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 105.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 105.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 104.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 103.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 102.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 102.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 102.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 101.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 101.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 101.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 101.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 98.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 98.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 98.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 97.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 95.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 95.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 94.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 93.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 92.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 91.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 91.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 91.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 89.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 89.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 88.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 88.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 88.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 87.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 86.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 86.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 85.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 85.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 85.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 84.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 83.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 83.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 82.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 81.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 81.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 80.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 79.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 78.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 77.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 76.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 73.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 73.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 72.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 72.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 71.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 70.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 70.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 68.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 68.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 67.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 66.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 61.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 60.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 58.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 56.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 46.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 64.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 64.7
FF:10181-103D1 60 years, female 73.2
FF:10159-103A6 76 years, female 56.2

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