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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:486.0 nTPM
HPA:486.0 nTPM
GTEx:623.8 nTPM
FANTOM5:597.1 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:611.1 nTPM
Allen mouse:5.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 486.0
Sample id Sample description nTPM
Amygdala
nTPM: 486.0
2514 Male, age 75, right hemisphere 498.5
1987 Female, age 91, left hemisphere 498.4
2695 Female, age 67, right hemisphere 486.8
2814 Male, age 76, right hemisphere 481.6
2517 Female, age 94, left hemisphere 464.9
Basal amygdala
nTPM: 469.1
1955 Male, age 76, both hemispheres 488.7
2609 Male, age 75, right hemisphere 479.3
2243 Female, age 91, right hemisphere 473.8
2110 Male, age 80, left hemisphere 472.7
2685 Female, age 94, left hemisphere 453.7
2827 Female, age 67, right hemisphere 446.2
Central amygdala
nTPM: 472.5
2239 Male, age 80, left hemisphere 483.2
1905 Male, age 76, both hemispheres 481.6
2515 Male, age 75, right hemisphere 481.6
2701 Female, age 91, right hemisphere 465.2
2826 Female, age 94, left hemisphere 450.7
Corticomedial amygdala
nTPM: 481.4
2240 Male, age 76, both hemispheres 505.0
2242 Female, age 91, right hemisphere 489.1
2428 Male, age 75, right hemisphere 485.8
2829 Male, age 80, left hemisphere 479.6
2429 Female, age 94, left hemisphere 473.4
2535 Female, age 67, right hemisphere 455.5
Lateral amygdala
nTPM: 465.5
1883 Male, age 76, both hemispheres 482.2
2256 Male, age 80, left hemisphere 478.6
2516 Male, age 75, right hemisphere 478.5
2255 Female, age 91, right hemisphere 455.9
2534 Female, age 94, left hemisphere 450.4
2830 Female, age 67, right hemisphere 447.6
Stria terminalis, bed nucleus
nTPM: 454.6
1974 Female, age 91, both hemispheres 460.3
2201 Male, age 74, unknown 453.0
2486 Female, age 94, both hemispheres 450.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 623.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 623.8
Samples: 152

Max nTPM: 1782.1
Min nTPM: 108.2
Std nTPM: 263.4
Median nTPM: 574.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1782.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1633.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1566.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1487.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1395.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1238.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1227.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1054.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1046.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1039.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1036.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1025.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1009.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 946.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 906.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 904.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 872.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 868.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 861.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 855.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 851.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 832.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 825.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 822.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 816.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 815.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 804.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 796.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 788.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 785.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 781.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 779.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 772.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 766.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 746.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 737.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 736.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 713.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 705.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 698.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 697.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 696.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 691.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 689.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 685.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 684.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 677.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 672.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 670.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 670.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 669.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 655.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 649.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 649.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 649.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 645.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 639.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 638.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 634.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 629.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 626.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 621.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 616.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 615.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 607.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 603.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 602.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 594.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 591.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 589.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 582.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 582.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 579.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 577.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 576.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 575.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 574.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 561.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 550.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 548.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 548.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 546.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 544.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 543.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 538.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 536.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 535.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 533.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 533.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 531.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 531.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 520.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 516.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 515.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 513.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 513.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 507.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 498.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 497.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 494.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 493.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 492.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 490.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 489.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 488.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 487.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 485.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 480.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 476.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 475.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 472.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 470.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 468.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 466.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 466.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 464.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 463.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 460.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 453.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 441.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 440.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 439.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 434.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 433.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 426.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 424.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 423.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 422.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 421.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 417.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 401.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 400.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 397.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 379.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 376.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 371.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 367.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 353.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 348.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 341.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 336.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 333.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 331.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 329.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 322.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 320.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 315.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 279.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 269.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 263.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 190.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 108.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 597.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 597.1
FF:10151-102I7 76 years, female 597.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.1
Pig sample Sample description nTPM
Amygdala
nTPM: 47.1
Samples: 4

Max nTPM: 52.9
Min nTPM: 34.1
Sample A Female 52.9
Sample B Female 52.0
Sample C Male 49.2
Sample D Male 34.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 611.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 611.1
Samples: 4

Max nTPM: 633.8
Min nTPM: 596.5
Sample A Male 596.5
Sample B Male 596.6
Sample C Female 617.6
Sample D Female 633.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.8
71836880 Antisense, RP_051017_02_E10, Mouse strain C57BL/6J (56 days, male) 7.2
68632649 Antisense, RP_050125_02_A01, Mouse strain C57BL/6J (56 days, male) 4.5

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