MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:495.1 nTPM
HPA:495.1 nTPM
GTEx:510.9 nTPM
FANTOM5:622.2 Scaled Tags Per Million
Pig:83.5 nTPM
Mouse:863.3 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 495.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 469.1
2828 Female, age 72, unknown 494.8
1870 Female, age 42, unknown 486.5
1827 Male, age 72, unknown 467.4
1833 Male, age 53, unknown 467.2
2666 Male, age 74, left hemisphere 466.9
1830 Male, age 51, unknown 464.9
2219 Male, age 76, both hemispheres 464.8
2019 Male, age 18, unknown 463.5
2411 Female, age 72, unknown 463.4
2586 Male, age 75, left hemisphere 451.8
Dorsal raphe nucleus
nTPM: 480.0
2016 Female, age 72, unknown 488.3
2298 Female, age 72, unknown 485.7
2047 Male, age 72, unknown 476.5
2750 Male, age 76, both hemispheres 475.9
1828 Male, age 53, unknown 473.7
Inferior colliculus
nTPM: 476.6
2849 Male, age 72, unknown 478.8
2097 Female, age 72, unknown 478.5
1848 Female, age 42, unknown 475.8
1890 Male, age 53, unknown 473.5
Median raphe nucleus
nTPM: 489.2
2220 Male, age 76, midline 489.2
Pedunculopontine tegmental nucleus
nTPM: 487.6
2338 Male, age 61, both hemispheres 501.9
2334 Male, age 80, both hemispheres 492.0
1921 Female, age 85, both hemispheres 468.8
Periaquaductal grey, anterior
nTPM: 469.7
1795 Male, age 51, unknown 477.7
1947 Male, age 18, unknown 468.1
2502 Female, age 75, unknown 463.4
Periaquaductal grey, dorsal
nTPM: 495.1
2850 Male, age 76, both hemispheres 543.2
1840 Male, age 53, unknown 482.1
1831 Male, age 72, unknown 481.7
2464 Female, age 72, unknown 473.5
Periaquaductal grey, lateral
nTPM: 494.4
2140 Male, age 76, both hemispheres 514.7
2053 Male, age 18, unknown 499.1
2272 Male, age 74, both hemispheres 469.3
Pretectal area
nTPM: 483.6
2273 Male, age 74, both hemispheres 502.9
2316 Male, age 76, right hemisphere 495.6
2667 Female, age 75, unknown 491.5
2224 Female, age 72, unknown 490.7
2407 Male, age 75, both hemispheres 488.0
1817 Female, age 42, unknown 483.9
1815 Male, age 53, unknown 480.9
1944 Female, age 72, unknown 478.7
2825 Male, age 18, unknown 478.4
1816 Male, age 51, unknown 465.6
2007 Male, age 72, unknown 463.4
Red nucleus
nTPM: 471.5
2725 Female, age 75, unknown 496.8
1865 Male, age 51, unknown 484.2
1954 Female, age 42, unknown 482.5
2503 Female, age 72, unknown 482.3
1904 Male, age 53, unknown 474.5
2823 Male, age 76, right hemisphere 472.6
2769 Male, age 72, unknown 472.0
2227 Male, age 72, unknown 469.4
2785 Male, age 18, unknown 468.6
1821 Female, age 72, unknown 466.1
2584 Male, age 75, left hemisphere 445.8
2588 Male, age 74, left hemisphere 443.6
Substantia nigra
nTPM: 465.2
2699 Male, age 18, unknown 483.2
1941 Male, age 53, unknown 476.1
1889 Female, age 72, unknown 470.4
2241 Male, age 72, unknown 468.4
1851 Male, age 51, unknown 465.2
1916 Female, age 42, unknown 463.2
2409 Female, age 72, unknown 459.5
2665 Male, age 74, both hemispheres 456.8
2590 Female, age 75, unknown 454.5
2583 Male, age 75, right hemisphere 454.4
Superior colliculus
nTPM: 478.8
1995 Male, age 72, unknown 506.1
1913 Female, age 42, unknown 497.7
2587 Male, age 74, left hemisphere 483.2
2087 Female, age 72, unknown 476.6
1796 Male, age 53, unknown 475.6
1839 Male, age 51, unknown 473.0
2664 Male, age 75, both hemispheres 472.7
1895 Male, age 76, right hemisphere 471.3
2668 Female, age 75, unknown 466.7
2261 Male, age 18, unknown 465.5
Ventral tegmental area
nTPM: 479.4
2223 Female, age 72, unknown 489.2
2021 Male, age 53, unknown 482.6
1942 Male, age 51, unknown 481.1
1915 Female, age 42, unknown 481.0
2218 Male, age 76, both hemispheres 474.2
2410 Female, age 72, unknown 468.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 510.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 510.9
Samples: 139

Max nTPM: 1256.1
Min nTPM: 223.1
Std nTPM: 188.8
Median nTPM: 457.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1256.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1079.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1020.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 950.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 946.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 941.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 913.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 910.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 866.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 866.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 838.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 622.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 622.2
FF:10158-103A5 76 years, female 622.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.5
Pig sample Sample description nTPM
Midbrain
nTPM: 78.5
Samples: 4

Max nTPM: 119.1
Min nTPM: 52.7
Sample A Female 119.1
Sample B Female 89.0
Sample C Male 53.1
Sample D Male 52.7
Periaqueductal gray
nTPM: 68.6
Samples: 3

Max nTPM: 71.2
Min nTPM: 65.8
Sample B Female 71.2
Sample C Male 68.9
Sample D Male 65.8
Substantia nigra
nTPM: 83.6
Samples: 4

Max nTPM: 112.9
Min nTPM: 69.6
Sample A Female 112.9
Sample B Female 69.6
Sample C Male 71.4
Sample D Male 80.4
Superior colliculi
nTPM: 64.4
Samples: 4

Max nTPM: 83.8
Min nTPM: 38.6
Sample A Female 83.8
Sample B Female 38.6
Sample C Male 69.2
Sample D Male 66.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 863.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 863.3
Samples: 4

Max nTPM: 935.3
Min nTPM: 790.7
Sample A Male 935.3
Sample B Male 814.3
Sample C Female 790.7
Sample D Female 912.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
71836880 Antisense, RP_051017_02_E10, Mouse strain C57BL/6J (56 days, male) 9.0
68632649 Antisense, RP_050125_02_A01, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.