MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.6 nTPM
HPA:23.6 nTPM
GTEx:14.2 nTPM
FANTOM5:85.0 Scaled Tags Per Million
Pig:14.3 nTPM
Mouse:0.0 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.6
2666 Male, age 74, left hemisphere 18.5
2019 Male, age 18, unknown 17.6
2828 Female, age 72, unknown 17.5
1830 Male, age 51, unknown 17.2
1833 Male, age 53, unknown 16.7
1870 Female, age 42, unknown 16.2
1827 Male, age 72, unknown 16.0
2411 Female, age 72, unknown 15.7
2586 Male, age 75, left hemisphere 15.4
2219 Male, age 76, both hemispheres 14.8
Dorsal raphe nucleus
nTPM: 17.5
2750 Male, age 76, both hemispheres 18.5
2298 Female, age 72, unknown 18.4
2047 Male, age 72, unknown 17.5
2016 Female, age 72, unknown 16.8
1828 Male, age 53, unknown 16.4
Inferior colliculus
nTPM: 16.5
2097 Female, age 72, unknown 17.1
1890 Male, age 53, unknown 16.8
2849 Male, age 72, unknown 16.2
1848 Female, age 42, unknown 16.1
Median raphe nucleus
nTPM: 17.0
2220 Male, age 76, midline 17.0
Pedunculopontine tegmental nucleus
nTPM: 23.6
2338 Male, age 61, both hemispheres 38.3
2334 Male, age 80, both hemispheres 17.7
1921 Female, age 85, both hemispheres 14.9
Periaquaductal grey, anterior
nTPM: 16.8
1795 Male, age 51, unknown 18.4
1947 Male, age 18, unknown 16.6
2502 Female, age 75, unknown 15.3
Periaquaductal grey, dorsal
nTPM: 16.8
1831 Male, age 72, unknown 18.6
1840 Male, age 53, unknown 16.5
2464 Female, age 72, unknown 16.3
2850 Male, age 76, both hemispheres 15.8
Periaquaductal grey, lateral
nTPM: 17.7
2272 Male, age 74, both hemispheres 19.8
2053 Male, age 18, unknown 17.5
2140 Male, age 76, both hemispheres 15.9
Pretectal area
nTPM: 17.3
2007 Male, age 72, unknown 18.7
2407 Male, age 75, both hemispheres 18.6
2316 Male, age 76, right hemisphere 18.4
2273 Male, age 74, both hemispheres 18.1
1817 Female, age 42, unknown 18.0
1944 Female, age 72, unknown 17.3
1815 Male, age 53, unknown 17.2
1816 Male, age 51, unknown 17.2
2825 Male, age 18, unknown 16.5
2224 Female, age 72, unknown 15.2
2667 Female, age 75, unknown 15.0
Red nucleus
nTPM: 17.3
2823 Male, age 76, right hemisphere 20.4
2725 Female, age 75, unknown 19.9
2503 Female, age 72, unknown 18.0
2785 Male, age 18, unknown 17.7
1865 Male, age 51, unknown 17.4
1821 Female, age 72, unknown 17.0
2584 Male, age 75, left hemisphere 16.7
1904 Male, age 53, unknown 16.5
2769 Male, age 72, unknown 16.3
1954 Female, age 42, unknown 16.2
2227 Male, age 72, unknown 16.0
2588 Male, age 74, left hemisphere 15.3
Substantia nigra
nTPM: 18.8
2590 Female, age 75, unknown 26.8
2409 Female, age 72, unknown 20.3
2665 Male, age 74, both hemispheres 19.6
1916 Female, age 42, unknown 18.3
2583 Male, age 75, right hemisphere 17.9
2241 Male, age 72, unknown 17.5
2699 Male, age 18, unknown 17.5
1851 Male, age 51, unknown 17.1
1889 Female, age 72, unknown 16.7
1941 Male, age 53, unknown 16.5
Superior colliculus
nTPM: 17.9
1913 Female, age 42, unknown 20.9
2087 Female, age 72, unknown 19.2
2587 Male, age 74, left hemisphere 18.8
1995 Male, age 72, unknown 18.5
1796 Male, age 53, unknown 18.3
2261 Male, age 18, unknown 17.2
1839 Male, age 51, unknown 16.8
2664 Male, age 75, both hemispheres 16.8
1895 Male, age 76, right hemisphere 16.5
2668 Female, age 75, unknown 16.0
Ventral tegmental area
nTPM: 18.5
2021 Male, age 53, unknown 22.2
2218 Male, age 76, both hemispheres 19.0
1915 Female, age 42, unknown 18.0
2223 Female, age 72, unknown 17.4
1942 Male, age 51, unknown 17.3
2410 Female, age 72, unknown 17.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.2
Samples: 139

Max nTPM: 140.4
Min nTPM: 0.4
Std nTPM: 18.6
Median nTPM: 8.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 140.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 91.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 77.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 62.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 54.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 54.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 49.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 47.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 47.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 45.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 40.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.0
FF:10158-103A5 76 years, female 85.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.3
Pig sample Sample description nTPM
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 13.0
Min nTPM: 5.5
Sample A Female 13.0
Sample B Female 9.1
Sample C Male 6.7
Sample D Male 5.5
Periaqueductal gray
nTPM: 6.2
Samples: 3

Max nTPM: 10.0
Min nTPM: 3.7
Sample B Female 10.0
Sample C Male 3.7
Sample D Male 4.8
Substantia nigra
nTPM: 14.3
Samples: 4

Max nTPM: 25.5
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 25.5
Sample C Male 8.6
Sample D Male 15.2
Superior colliculi
nTPM: 12.2
Samples: 4

Max nTPM: 16.5
Min nTPM: 9.6
Sample A Female 12.0
Sample B Female 16.5
Sample C Male 10.6
Sample D Male 9.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68545288 Antisense, RP_050118_03_B07, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.