MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:108.9 nTPM
HPA:108.9 nTPM
GTEx:74.1 nTPM
FANTOM5:294.1 Scaled Tags Per Million
Mouse:61.0 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 108.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.6
2019 Male, age 18, unknown 119.8
2411 Female, age 72, unknown 103.3
1830 Male, age 51, unknown 99.2
1833 Male, age 53, unknown 90.9
2828 Female, age 72, unknown 84.3
2666 Male, age 74, left hemisphere 82.2
1827 Male, age 72, unknown 77.4
1870 Female, age 42, unknown 76.0
2219 Male, age 76, both hemispheres 71.8
2586 Male, age 75, left hemisphere 61.7
Dorsal raphe nucleus
nTPM: 66.3
2750 Male, age 76, both hemispheres 110.4
2016 Female, age 72, unknown 60.9
1828 Male, age 53, unknown 56.4
2298 Female, age 72, unknown 53.5
2047 Male, age 72, unknown 50.2
Inferior colliculus
nTPM: 70.7
1890 Male, age 53, unknown 78.5
2849 Male, age 72, unknown 73.1
1848 Female, age 42, unknown 66.0
2097 Female, age 72, unknown 65.2
Median raphe nucleus
nTPM: 68.4
2220 Male, age 76, midline 68.4
Pedunculopontine tegmental nucleus
nTPM: 95.5
2338 Male, age 61, both hemispheres 112.8
2334 Male, age 80, both hemispheres 92.5
1921 Female, age 85, both hemispheres 81.1
Periaquaductal grey, anterior
nTPM: 58.2
2502 Female, age 75, unknown 60.6
1947 Male, age 18, unknown 59.1
1795 Male, age 51, unknown 55.0
Periaquaductal grey, dorsal
nTPM: 54.5
2464 Female, age 72, unknown 70.4
1831 Male, age 72, unknown 58.0
2850 Male, age 76, both hemispheres 47.1
1840 Male, age 53, unknown 42.6
Periaquaductal grey, lateral
nTPM: 58.8
2272 Male, age 74, both hemispheres 77.1
2053 Male, age 18, unknown 54.8
2140 Male, age 76, both hemispheres 44.5
Pretectal area
nTPM: 85.8
2007 Male, age 72, unknown 120.1
1815 Male, age 53, unknown 105.9
1817 Female, age 42, unknown 101.1
2407 Male, age 75, both hemispheres 95.9
1944 Female, age 72, unknown 94.7
1816 Male, age 51, unknown 93.3
2316 Male, age 76, right hemisphere 90.9
2273 Male, age 74, both hemispheres 67.1
2825 Male, age 18, unknown 60.9
2667 Female, age 75, unknown 58.1
2224 Female, age 72, unknown 56.2
Red nucleus
nTPM: 108.9
2785 Male, age 18, unknown 133.2
2823 Male, age 76, right hemisphere 129.5
1865 Male, age 51, unknown 126.4
2503 Female, age 72, unknown 116.3
1904 Male, age 53, unknown 114.8
1821 Female, age 72, unknown 113.3
2227 Male, age 72, unknown 104.5
2769 Male, age 72, unknown 102.9
2588 Male, age 74, left hemisphere 93.8
1954 Female, age 42, unknown 93.5
2725 Female, age 75, unknown 92.8
2584 Male, age 75, left hemisphere 85.2
Substantia nigra
nTPM: 79.4
2590 Female, age 75, unknown 118.6
1941 Male, age 53, unknown 102.0
2583 Male, age 75, right hemisphere 97.3
1889 Female, age 72, unknown 89.6
2409 Female, age 72, unknown 79.5
2665 Male, age 74, both hemispheres 76.4
1851 Male, age 51, unknown 67.1
2699 Male, age 18, unknown 61.1
1916 Female, age 42, unknown 52.1
2241 Male, age 72, unknown 50.5
Superior colliculus
nTPM: 90.1
1995 Male, age 72, unknown 123.3
1913 Female, age 42, unknown 116.1
1895 Male, age 76, right hemisphere 99.0
2587 Male, age 74, left hemisphere 92.1
2668 Female, age 75, unknown 90.5
2261 Male, age 18, unknown 89.2
2087 Female, age 72, unknown 87.8
1839 Male, age 51, unknown 79.7
1796 Male, age 53, unknown 67.9
2664 Male, age 75, both hemispheres 55.1
Ventral tegmental area
nTPM: 77.1
2410 Female, age 72, unknown 101.0
2218 Male, age 76, both hemispheres 94.1
2223 Female, age 72, unknown 80.1
1942 Male, age 51, unknown 65.7
2021 Male, age 53, unknown 64.3
1915 Female, age 42, unknown 57.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.1
Samples: 139

Max nTPM: 233.1
Min nTPM: 14.2
Std nTPM: 37.2
Median nTPM: 66.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 233.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 225.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 188.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 179.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 169.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 157.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 147.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 145.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 145.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 140.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 135.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 294.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 294.1
FF:10158-103A5 76 years, female 294.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.0
Samples: 4

Max nTPM: 71.0
Min nTPM: 52.4
Sample A Male 52.4
Sample B Male 59.7
Sample C Female 71.0
Sample D Female 60.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
70743907 Antisense, RP_050725_02_A11, Mouse strain C57BL/6J (56 days, male) 4.6
67792193 Antisense, RP_040920_01_C11, Mouse strain C57BL/6J (56 days, male) 2.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.